Thomas Wolf
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/CNVPanelizer |
| Branch: RELEASE_3_11 |
| Last Commit: 870407f |
| Last Changed Date: 2020-04-27 14:49:47 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:21 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE CNVPanelizer PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 337/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CNVPanelizer 1.20.0 Thomas Wolf
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: CNVPanelizer |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CNVPanelizer_1.20.0.tar.gz && rm -rf CNVPanelizer.buildbin-libdir && mkdir CNVPanelizer.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVPanelizer.buildbin-libdir CNVPanelizer_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CNVPanelizer_1.20.0.zip && rm CNVPanelizer_1.20.0.tar.gz CNVPanelizer_1.20.0.zip |
| StartedAt: 2020-10-16 18:25:56 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:27:08 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 71.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CNVPanelizer_1.20.0.tar.gz && rm -rf CNVPanelizer.buildbin-libdir && mkdir CNVPanelizer.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVPanelizer.buildbin-libdir CNVPanelizer_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CNVPanelizer_1.20.0.zip && rm CNVPanelizer_1.20.0.tar.gz CNVPanelizer_1.20.0.zip
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install for i386
* installing *source* package 'CNVPanelizer' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CNVPanelizer'
finding HTML links ... done
Background html
BedToGenomicRanges html
BootList html
CNVPanelizer-package html
CNVPanelizerFromReadCounts html
CNVPanelizerFromReadCountsHelper html
CollectColumnFromAllReportTables html
CombinedNormalizedCounts html
IndexMultipleBams html
NormalizedCounts html
PlotBootstrapDistributions html
ReadCountsFromBam html
ReadXLSXToList html
ReportTables html
RunCNVPanelizerShiny html
SelectReferenceSetByInterquartileRange
html
SelectReferenceSetByKmeans html
SelectReferenceSetByPercentil html
SelectReferenceSetFromReadCounts html
StatusHeatmap html
WriteListToXLSX html
referenceReadCounts html
sampleReadCounts html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CNVPanelizer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNVPanelizer' as CNVPanelizer_1.20.0.zip
* DONE (CNVPanelizer)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CNVPanelizer' successfully unpacked and MD5 sums checked