Back to Multiple platform build/check report for BioC 3.11
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for CINdex on tokay2

This page was generated on 2020-10-17 11:56:17 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE CINdex PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 300/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CINdex 1.16.0
Yuriy Gusev
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/CINdex
Branch: RELEASE_3_11
Last Commit: e97f750
Last Changed Date: 2020-04-27 14:56:21 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CINdex
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CINdex_1.16.0.tar.gz && rm -rf CINdex.buildbin-libdir && mkdir CINdex.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CINdex.buildbin-libdir CINdex_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CINdex_1.16.0.zip && rm CINdex_1.16.0.tar.gz CINdex_1.16.0.zip
StartedAt: 2020-10-16 18:04:08 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:05:44 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 95.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CINdex_1.16.0.tar.gz && rm -rf CINdex.buildbin-libdir && mkdir CINdex.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CINdex.buildbin-libdir CINdex_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CINdex_1.16.0.zip && rm CINdex_1.16.0.tar.gz CINdex_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 11.8M  100 11.8M    0     0  61.4M      0 --:--:-- --:--:-- --:--:-- 63.6M

install for i386

* installing *source* package 'CINdex' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'CINdex'
** help
*** installing help indices
  converting help for package 'CINdex'
    finding HTML links ... done
    clin.crc                                html  
    cnvgr.18.auto                           html  
    comp.heatmap                            html  
    cyto.cin4heatmap                        html  
    cytobands.cin                           html  
    extract.genes.in.cyto.regions           html  
    geneAnno                                html  
    grl.data                                html  
    hg18.ucsctrack                          html  
    run.cin.chr                             html  
    run.cin.cyto                            html  
    snpgr.18.auto                           html  
    ttest.cyto.cin.heatmap                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'CINdex'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'CINdex'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CINdex' ...
** testing if installed package can be loaded
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'CINdex'
* MD5 sums
packaged installation of 'CINdex' as CINdex_1.16.0.zip
* DONE (CINdex)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CINdex' successfully unpacked and MD5 sums checked