Back to Build/check report for BioC 3.10 experimental data

CHECK report for miRNATarget on malbec1

This page was generated on 2020-04-14 17:46:19 -0400 (Tue, 14 Apr 2020).

Package 227/384HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.24.0
Y-h. Taguchi
Snapshot Date: 2020-04-14 09:30:11 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/miRNATarget
Branch: RELEASE_3_10
Last Commit: 1463ad6
Last Changed Date: 2019-10-29 13:29:37 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: miRNATarget
Version: 1.24.0
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings miRNATarget_1.24.0.tar.gz
StartedAt: 2020-04-14 13:06:54 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 13:08:18 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 83.4 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings miRNATarget_1.24.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.10-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.



Installation output

miRNATarget.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL miRNATarget
###
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0120.0040.013
HS_refseq_to_affy_hc_g1100.0040.0000.005
HS_refseq_to_affy_hg_focus0.0120.0080.019
HS_refseq_to_affy_hg_u133_plus_20.0680.0040.070
HS_refseq_to_affy_hg_u133a0.0400.0000.042
HS_refseq_to_affy_hg_u133a_20.0400.0000.042
HS_refseq_to_affy_hg_u133b0.0200.0040.021
HS_refseq_to_affy_hg_u95a0.0280.0000.029
HS_refseq_to_affy_hg_u95av20.0240.0000.025
HS_refseq_to_affy_hg_u95b0.0160.0000.016
HS_refseq_to_affy_hg_u95c0.0120.0000.012
HS_refseq_to_affy_hg_u95d0.0080.0000.008
HS_refseq_to_affy_hg_u95e0.0120.0000.012
HS_refseq_to_affy_huex_1_0_st_v21.0040.0281.033
HS_refseq_to_affy_hugene_1_0_st_v10.0560.0000.056
HS_refseq_to_affy_hugenefl0.0120.0000.015
HS_refseq_to_affy_u133_x3p0.0800.0000.082
HS_refseq_to_agilent_cgh_44b0.0160.0000.014
HS_refseq_to_agilent_wholegenome0.0760.0000.076
HS_refseq_to_canonical_transcript_stable_id0.0720.0000.072
HS_refseq_to_ccds0.0440.0000.043
HS_refseq_to_codelink0.0440.0000.044
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0000.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0040.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0000.0000.002
HS_refseq_to_embl0.8240.0160.840
HS_refseq_to_ensembl_exon_id0.0000.0000.001
HS_refseq_to_ensembl_gene_id0.0560.0000.053
HS_refseq_to_ensembl_peptide_id0.0440.0000.047
HS_refseq_to_ensembl_transcript_id0.060.000.06
HS_refseq_to_entrezgene0.0480.0040.051
HS_refseq_to_hgnc_id0.1880.0000.190
HS_refseq_to_hgnc_symbol0.0440.0040.046
HS_refseq_to_hgnc_transcript_name0.0520.0000.052
HS_refseq_to_illumina_humanht_120.0560.0000.055
HS_refseq_to_illumina_humanwg_6_v10.0480.0000.047
HS_refseq_to_illumina_humanwg_6_v20.0440.0000.042
HS_refseq_to_illumina_humanwg_6_v30.0520.0000.051
HS_refseq_to_interpro0.1280.0000.129
HS_refseq_to_ipi0.1120.0000.113
HS_refseq_to_merops0.0080.0000.005
HS_refseq_to_pdb0.0920.0000.094
HS_refseq_to_pfam0.0760.0000.073
HS_refseq_to_phalanx_onearray0.0480.0000.046
HS_refseq_to_protein_id1.2400.0001.242
HS_refseq_to_refseq_dna0.0560.0000.056
HS_refseq_to_refseq_genomic0.0000.0040.001
HS_refseq_to_refseq_peptide0.1000.0000.099
HS_refseq_to_rfam0.0000.0000.002
HS_refseq_to_rfam_gene_name0.0000.0000.001
HS_refseq_to_rfam_transcript_name0.0000.0000.001
HS_refseq_to_smart0.0400.0000.038
HS_refseq_to_tigrfam0.0040.0000.006
HS_refseq_to_ucsc0.0520.0000.053
HS_refseq_to_unigene0.0640.0000.067
HS_refseq_to_uniprot_genename0.0400.0040.043
HS_refseq_to_uniprot_genename_transcript_name0.0040.0000.001
HS_refseq_to_uniprot_sptrembl0.0000.0000.001
HS_refseq_to_uniprot_swissprot0.0040.0000.001
HS_refseq_to_uniprot_swissprot_accession0.0000.0000.002
HS_refseq_to_wikigene_id0.0040.0000.001
HS_refseq_to_wikigene_name0.0480.0000.049
MM_conv_id0.0040.0000.002
MM_refseq_to_affy_mg_u74a0.0160.0000.017
MM_refseq_to_affy_mg_u74av20.0120.0040.016
MM_refseq_to_affy_mg_u74b0.0120.0000.013
MM_refseq_to_affy_mg_u74bv20.0120.0000.012
MM_refseq_to_affy_mg_u74c0.0040.0000.004
MM_refseq_to_affy_mg_u74cv20.0080.0000.006
MM_refseq_to_affy_moe430a0.0320.0000.033
MM_refseq_to_affy_moe430b0.0120.0040.015
MM_refseq_to_affy_moex_1_0_st_v10.4000.0120.410
MM_refseq_to_affy_mogene_1_0_st_v10.0440.0000.042
MM_refseq_to_affy_mouse430_20.0440.0000.045
MM_refseq_to_affy_mouse430a_20.0280.0040.033
MM_refseq_to_affy_mu11ksuba0.0080.0000.011
MM_refseq_to_affy_mu11ksubb0.0040.0040.008
MM_refseq_to_agilent_wholegenome0.0560.0000.057
MM_refseq_to_canonical_transcript_stable_id0.0520.0040.055
MM_refseq_to_ccds0.0320.0000.030
MM_refseq_to_codelink0.0320.0000.032
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0040.0000.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0000.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0000.0000.001
MM_refseq_to_embl0.3040.0040.308
MM_refseq_to_ensembl_exon_id0.0000.0000.001
MM_refseq_to_ensembl_gene_id0.1640.0040.167
MM_refseq_to_ensembl_peptide_id0.0360.0000.036
MM_refseq_to_ensembl_transcript_id0.0400.0000.041
MM_refseq_to_entrezgene0.0320.0040.035
MM_refseq_to_fantom0.1040.0000.104
MM_refseq_to_illumina_mousewg_6_v10.0520.0000.053
MM_refseq_to_illumina_mousewg_6_v20.0520.0000.054
MM_refseq_to_interpro0.1040.0040.108
MM_refseq_to_ipi0.0000.0040.001
MM_refseq_to_merops0.0040.0000.004
MM_refseq_to_mgi_id0.0360.0000.039
MM_refseq_to_mgi_symbol0.0400.0000.039
MM_refseq_to_mgi_transcript_name0.0400.0000.043
MM_refseq_to_pdb0.0080.0000.011
MM_refseq_to_pfam0.0640.0000.063
MM_refseq_to_phalanx_onearray0.0400.0000.039
MM_refseq_to_protein_id0.2960.0000.296
MM_refseq_to_refseq_dna0.0480.0000.046
MM_refseq_to_refseq_peptide0.080.000.08
MM_refseq_to_rfam0.0040.0000.001
MM_refseq_to_rfam_gene_name0.0000.0000.001
MM_refseq_to_rfam_transcript_name0.0000.0000.002
MM_refseq_to_smart0.0320.0000.030
MM_refseq_to_tigrfam0.0040.0000.005
MM_refseq_to_ucsc0.0400.0000.041
MM_refseq_to_unigene0.0520.0000.053
MM_refseq_to_uniprot_genename0.0360.0000.036
MM_refseq_to_uniprot_genename_transcript_name0.0040.0000.001
MM_refseq_to_uniprot_sptrembl0.0000.0000.001
MM_refseq_to_uniprot_swissprot0.0040.0000.001
MM_refseq_to_uniprot_swissprot_accession0.0000.0000.002
MM_refseq_to_wikigene_id0.0040.0000.001
MM_refseq_to_wikigene_name0.0320.0000.034
TBL21.3720.0481.417
TBL2_HS1.5040.1041.612
TBL2_MM0.8280.0720.903
conv_id0.0040.0000.002
id_conv0.0280.0000.030