Back to Build/check report for BioC 3.10 experimental data

CHECK report for geneLenDataBase on malbec1

This page was generated on 2020-04-14 17:46:18 -0400 (Tue, 14 Apr 2020).

Package 138/384HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.22.0
Matthew Young , Nadia Davidson
Snapshot Date: 2020-04-14 09:30:11 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/geneLenDataBase
Branch: RELEASE_3_10
Last Commit: a90fb8d
Last Changed Date: 2019-10-29 13:29:35 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.22.0
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings geneLenDataBase_1.22.0.tar.gz
StartedAt: 2020-04-14 12:59:47 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 13:08:47 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 540.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings geneLenDataBase_1.22.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.22.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.10-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0880.0080.097
anoCar1.genscan.LENGTH0.0720.0200.092
anoCar1.xenoRefGene.LENGTH1.0240.0001.023
anoGam1.ensGene.LENGTH0.0920.0440.135
anoGam1.geneid.LENGTH0.0760.0280.105
anoGam1.genscan.LENGTH0.0760.0120.088
apiMel1.genscan.LENGTH0.0480.0280.072
apiMel2.ensGene.LENGTH0.1080.0120.121
apiMel2.geneid.LENGTH0.0720.0320.106
apiMel2.genscan.LENGTH0.1040.0280.134
aplCal1.xenoRefGene.LENGTH0.6000.0040.605
bosTau2.geneSymbol.LENGTH0.0760.0160.092
bosTau2.geneid.LENGTH0.2200.0000.221
bosTau2.genscan.LENGTH0.0920.0320.127
bosTau2.refGene.LENGTH0.0680.0200.088
bosTau2.sgpGene.LENGTH0.1040.0000.103
bosTau3.ensGene.LENGTH0.1160.0320.151
bosTau3.geneSymbol.LENGTH0.0640.0120.076
bosTau3.geneid.LENGTH0.1320.0040.134
bosTau3.genscan.LENGTH0.0880.0080.094
bosTau3.refGene.LENGTH0.0360.0360.073
bosTau3.sgpGene.LENGTH0.8160.0200.834
bosTau4.ensGene.LENGTH0.1160.0240.141
bosTau4.geneSymbol.LENGTH0.0520.0120.065
bosTau4.genscan.LENGTH0.0760.0040.079
bosTau4.nscanGene.LENGTH0.0440.0160.060
bosTau4.refGene.LENGTH0.0400.0280.067
braFlo1.xenoRefGene.LENGTH0.3920.0120.405
caeJap1.xenoRefGene.LENGTH0.4200.0000.422
caePb1.xenoRefGene.LENGTH0.50.00.5
caePb2.xenoRefGene.LENGTH0.5040.0040.508
caeRem2.xenoRefGene.LENGTH0.4280.0000.429
caeRem3.xenoRefGene.LENGTH0.3560.0040.359
calJac1.genscan.LENGTH0.1120.0240.137
calJac1.nscanGene.LENGTH0.10.00.1
calJac1.xenoRefGene.LENGTH0.7440.0040.747
canFam1.ensGene.LENGTH0.1200.0000.118
canFam1.geneSymbol.LENGTH0.0080.0000.009
canFam1.genscan.LENGTH0.0680.0040.073
canFam1.nscanGene.LENGTH0.0640.0000.068
canFam1.refGene.LENGTH0.0040.0040.008
canFam1.xenoRefGene.LENGTH0.6840.0000.685
canFam2.ensGene.LENGTH0.1240.0240.146
canFam2.geneSymbol.LENGTH0.0040.0040.008
canFam2.genscan.LENGTH0.0600.0040.063
canFam2.nscanGene.LENGTH0.0640.0080.073
canFam2.refGene.LENGTH0.0080.0000.008
canFam2.xenoRefGene.LENGTH0.5400.0000.539
cavPor3.ensGene.LENGTH0.1040.0080.112
cavPor3.genscan.LENGTH0.1040.0040.107
cavPor3.nscanGene.LENGTH0.1920.0000.190
cavPor3.xenoRefGene.LENGTH0.7240.0000.723
cb1.xenoRefGene.LENGTH0.4280.0000.429
cb3.xenoRefGene.LENGTH0.3600.0000.358
ce2.geneSymbol.LENGTH0.1720.0560.231
ce2.geneid.LENGTH0.0520.0080.062
ce2.refGene.LENGTH0.0840.0640.148
ce4.geneSymbol.LENGTH0.1080.0320.141
ce4.refGene.LENGTH0.0760.0600.138
ce4.xenoRefGene.LENGTH0.080.000.08
ce6.ensGene.LENGTH0.0960.0080.106
ce6.geneSymbol.LENGTH0.0840.0520.133
ce6.refGene.LENGTH0.0920.0440.138
ce6.xenoRefGene.LENGTH0.0800.0000.079
ci1.geneSymbol.LENGTH0.0040.0040.007
ci1.refGene.LENGTH0.0040.0040.007
ci1.xenoRefGene.LENGTH0.180.000.18
ci2.ensGene.LENGTH0.0600.0040.065
ci2.geneSymbol.LENGTH0.0040.0000.007
ci2.refGene.LENGTH0.0000.0040.007
ci2.xenoRefGene.LENGTH0.2640.0040.265
danRer3.ensGene.LENGTH0.1360.0240.162
danRer3.geneSymbol.LENGTH0.0840.0280.110
danRer3.refGene.LENGTH0.0920.0200.113
danRer4.ensGene.LENGTH0.1640.0000.165
danRer4.geneSymbol.LENGTH0.0880.0280.119
danRer4.genscan.LENGTH0.0640.0040.067
danRer4.nscanGene.LENGTH0.3400.0320.369
danRer4.refGene.LENGTH0.0760.0360.112
danRer5.ensGene.LENGTH0.1440.0080.153
danRer5.geneSymbol.LENGTH0.0720.0240.096
danRer5.refGene.LENGTH0.0640.0280.096
danRer5.vegaGene.LENGTH0.0560.0360.092
danRer5.vegaPseudoGene.LENGTH0.0040.0000.003
danRer6.ensGene.LENGTH0.1400.0200.161
danRer6.geneSymbol.LENGTH0.0920.0120.105
danRer6.refGene.LENGTH0.0800.0320.112
danRer6.xenoRefGene.LENGTH0.5840.0000.580
dm1.geneSymbol.LENGTH0.0880.0520.139
dm1.genscan.LENGTH0.0320.0160.051
dm1.refGene.LENGTH0.0800.0480.128
dm2.geneSymbol.LENGTH0.0800.0520.135
dm2.geneid.LENGTH0.0480.0320.077
dm2.genscan.LENGTH0.0280.0200.049
dm2.nscanGene.LENGTH0.0480.0040.050
dm2.refGene.LENGTH0.0840.0440.128
dm3.geneSymbol.LENGTH0.0600.0040.063
dm3.nscanPasaGene.LENGTH0.0720.0360.108
dm3.refGene.LENGTH0.0640.0000.063
dp2.genscan.LENGTH0.0400.0160.058
dp2.xenoRefGene.LENGTH0.2400.0040.244
dp3.geneid.LENGTH0.0640.0240.085
dp3.genscan.LENGTH0.0400.0120.051
dp3.xenoRefGene.LENGTH0.1480.0360.186
droAna1.geneid.LENGTH0.0680.0080.077
droAna1.genscan.LENGTH0.0240.0000.023
droAna1.xenoRefGene.LENGTH0.3600.0080.368
droAna2.genscan.LENGTH0.0480.0000.047
droAna2.xenoRefGene.LENGTH0.3520.0040.357
droEre1.genscan.LENGTH0.0400.0200.058
droEre1.xenoRefGene.LENGTH0.3160.0120.328
droGri1.genscan.LENGTH0.0520.0240.076
droGri1.xenoRefGene.LENGTH0.3240.0000.323
droMoj1.geneid.LENGTH0.1360.0160.153
droMoj1.genscan.LENGTH0.0560.0000.056
droMoj1.xenoRefGene.LENGTH0.2480.0280.275
droMoj2.genscan.LENGTH0.0520.0160.068
droMoj2.xenoRefGene.LENGTH0.4480.0120.457
droPer1.genscan.LENGTH0.0600.0160.077
droPer1.xenoRefGene.LENGTH0.3520.0080.357
droSec1.genscan.LENGTH0.0360.0240.063
droSec1.xenoRefGene.LENGTH0.3520.0000.354
droSim1.geneid.LENGTH0.0480.0400.086
droSim1.genscan.LENGTH0.0400.0120.050
droSim1.xenoRefGene.LENGTH0.260.000.26
droVir1.geneid.LENGTH0.1080.0080.116
droVir1.genscan.LENGTH0.0600.0240.083
droVir1.xenoRefGene.LENGTH1.1040.0001.103
droVir2.genscan.LENGTH0.0480.0200.068
droVir2.xenoRefGene.LENGTH0.3120.0160.326
droYak1.geneid.LENGTH0.0520.0400.093
droYak1.genscan.LENGTH0.0280.0320.059
droYak1.xenoRefGene.LENGTH0.2440.0000.246
droYak2.genscan.LENGTH0.0320.0200.056
droYak2.xenoRefGene.LENGTH0.2560.0040.263
equCab1.geneSymbol.LENGTH0.0040.0040.008
equCab1.geneid.LENGTH0.0920.0160.111
equCab1.nscanGene.LENGTH0.0560.0320.086
equCab1.refGene.LENGTH0.0040.0040.008
equCab1.sgpGene.LENGTH0.0720.0040.077
equCab2.ensGene.LENGTH0.1040.0200.125
equCab2.geneSymbol.LENGTH0.0040.0040.012
equCab2.nscanGene.LENGTH0.0600.0400.104
equCab2.refGene.LENGTH0.0040.0040.011
equCab2.xenoRefGene.LENGTH0.6000.0000.597
felCat3.ensGene.LENGTH0.1000.0040.107
felCat3.geneSymbol.LENGTH0.0040.0000.006
felCat3.geneid.LENGTH0.4600.0000.462
felCat3.genscan.LENGTH0.1040.0280.134
felCat3.nscanGene.LENGTH0.1080.0240.129
felCat3.refGene.LENGTH0.0000.0040.006
felCat3.sgpGene.LENGTH0.1440.0000.144
felCat3.xenoRefGene.LENGTH1.2120.0081.219
fr1.ensGene.LENGTH0.0960.0160.111
fr1.genscan.LENGTH0.0600.0040.063
fr2.ensGene.LENGTH0.1840.0240.209
galGal2.ensGene.LENGTH0.0680.0000.068
galGal2.geneSymbol.LENGTH0.0200.0080.031
galGal2.geneid.LENGTH0.0480.0280.078
galGal2.genscan.LENGTH0.0720.0280.102
galGal2.refGene.LENGTH0.0320.0000.031
galGal2.sgpGene.LENGTH0.0760.0280.104
galGal3.ensGene.LENGTH0.2760.0120.286
galGal3.geneSymbol.LENGTH0.0200.0120.031
galGal3.genscan.LENGTH0.0640.0360.098
galGal3.nscanGene.LENGTH0.0640.0000.066
galGal3.refGene.LENGTH0.0160.0120.028
galGal3.xenoRefGene.LENGTH0.5080.0000.506
gasAcu1.ensGene.LENGTH0.0960.0320.129
gasAcu1.nscanGene.LENGTH0.1200.0200.141
hg16.acembly.LENGTH0.3800.0000.378
hg16.ensGene.LENGTH0.0720.0080.080
hg16.exoniphy.LENGTH0.2280.0000.226
hg16.geneSymbol.LENGTH0.1000.0080.110
hg16.geneid.LENGTH0.0680.0360.101
hg16.genscan.LENGTH0.0720.0000.075
hg16.knownGene.LENGTH0.3280.0320.361
hg16.refGene.LENGTH0.1000.0120.113
hg16.sgpGene.LENGTH0.0600.0040.065
hg17.acembly.LENGTH0.6040.0000.602
hg17.acescan.LENGTH0.0120.0040.016
hg17.ccdsGene.LENGTH0.0360.0080.043
hg17.ensGene.LENGTH0.1280.0240.152
hg17.exoniphy.LENGTH0.4000.0000.397
hg17.geneSymbol.LENGTH0.1040.0040.111
hg17.geneid.LENGTH0.0880.0040.092
hg17.genscan.LENGTH0.0600.0080.071
hg17.knownGene.LENGTH0.1080.0160.127
hg17.refGene.LENGTH0.0920.0120.104
hg17.sgpGene.LENGTH0.0760.0200.094
hg17.vegaGene.LENGTH0.0480.0280.077
hg17.vegaPseudoGene.LENGTH0.0200.0080.031
hg17.xenoRefGene.LENGTH0.2400.0000.241
hg18.acembly.LENGTH1.0920.0081.102
hg18.acescan.LENGTH0.0120.0080.016
hg18.ccdsGene.LENGTH0.0360.0240.062
hg18.ensGene.LENGTH0.1960.0080.202
hg18.exoniphy.LENGTH0.4240.0000.426
hg18.geneSymbol.LENGTH0.0960.0160.111
hg18.geneid.LENGTH0.0840.0160.097
hg18.genscan.LENGTH0.0600.0120.074
hg18.knownGene.LENGTH0.1560.0160.171
hg18.knownGeneOld3.LENGTH0.0800.0200.099
hg18.refGene.LENGTH0.1000.0080.108
hg18.sgpGene.LENGTH0.0800.0200.099
hg18.sibGene.LENGTH0.6760.0000.677
hg18.xenoRefGene.LENGTH0.4240.0080.432
hg19.ccdsGene.LENGTH0.0480.0280.075
hg19.ensGene.LENGTH0.3280.0120.339
hg19.exoniphy.LENGTH1.4440.0041.447
hg19.geneSymbol.LENGTH0.0880.0160.107
hg19.knownGene.LENGTH0.1520.0400.195
hg19.nscanGene.LENGTH0.1360.0000.133
hg19.refGene.LENGTH0.1000.0120.112
hg19.xenoRefGene.LENGTH0.3000.0040.304
loxAfr3.xenoRefGene.LENGTH0.7560.0000.754
mm7.ensGene.LENGTH0.1320.0000.133
mm7.geneSymbol.LENGTH0.1000.0000.101
mm7.geneid.LENGTH0.0840.0200.102
mm7.genscan.LENGTH0.0600.0040.065
mm7.knownGene.LENGTH0.1160.0040.120
mm7.refGene.LENGTH0.080.000.08
mm7.sgpGene.LENGTH0.0760.0200.098
mm7.xenoRefGene.LENGTH0.2600.0000.262
mm8.ccdsGene.LENGTH0.0240.0160.040
mm8.ensGene.LENGTH0.0880.0040.093
mm8.geneSymbol.LENGTH0.0840.0000.084
mm8.geneid.LENGTH0.0720.0240.098
mm8.genscan.LENGTH0.0600.0040.062
mm8.knownGene.LENGTH0.0800.0040.085
mm8.nscanGene.LENGTH0.0560.0000.055
mm8.refGene.LENGTH0.0680.0040.073
mm8.sgpGene.LENGTH0.0720.0240.095
mm8.sibGene.LENGTH0.2400.0000.243
mm8.xenoRefGene.LENGTH0.3800.0160.397
mm9.acembly.LENGTH0.3160.0040.320
mm9.ccdsGene.LENGTH0.0400.0160.056
mm9.ensGene.LENGTH0.1680.0360.205
mm9.exoniphy.LENGTH0.3920.0000.391
mm9.geneSymbol.LENGTH0.0920.0000.091
mm9.geneid.LENGTH0.1080.0040.112
mm9.genscan.LENGTH0.0600.0040.065
mm9.knownGene.LENGTH0.1320.0200.155
mm9.nscanGene.LENGTH0.0560.0040.059
mm9.refGene.LENGTH0.0760.0000.078
mm9.sgpGene.LENGTH0.0880.0160.106
mm9.xenoRefGene.LENGTH0.3640.0360.401
monDom1.genscan.LENGTH0.0600.0160.077
monDom4.ensGene.LENGTH0.0720.0120.085
monDom4.geneSymbol.LENGTH0.0040.0000.005
monDom4.genscan.LENGTH0.0840.0200.103
monDom4.nscanGene.LENGTH0.0800.0320.113
monDom4.refGene.LENGTH0.0080.0000.004
monDom4.xenoRefGene.LENGTH0.380.000.38
monDom5.ensGene.LENGTH0.1280.0000.129
monDom5.geneSymbol.LENGTH0.0000.0040.005
monDom5.genscan.LENGTH0.0560.0000.055
monDom5.nscanGene.LENGTH0.1280.0000.125
monDom5.refGene.LENGTH0.0040.0000.005
monDom5.xenoRefGene.LENGTH0.6480.0000.648
ornAna1.ensGene.LENGTH0.3840.0320.414
ornAna1.geneSymbol.LENGTH0.0000.0000.002
ornAna1.refGene.LENGTH0.0040.0000.002
ornAna1.xenoRefGene.LENGTH0.5720.0000.573
oryLat2.ensGene.LENGTH0.0800.0120.095
oryLat2.geneSymbol.LENGTH0.0040.0040.005
oryLat2.refGene.LENGTH0.0040.0000.005
oryLat2.xenoRefGene.LENGTH0.5720.0000.571
panTro1.ensGene.LENGTH0.0960.0160.112
panTro1.geneid.LENGTH0.0680.0280.098
panTro1.genscan.LENGTH0.0600.0000.062
panTro1.xenoRefGene.LENGTH0.1400.0160.156
panTro2.ensGene.LENGTH0.1240.0080.128
panTro2.geneSymbol.LENGTH0.1160.0080.125
panTro2.genscan.LENGTH0.0560.0040.061
panTro2.nscanGene.LENGTH0.0640.0000.060
panTro2.refGene.LENGTH0.1120.0040.116
panTro2.xenoRefGene.LENGTH0.5600.0000.559
petMar1.xenoRefGene.LENGTH0.2640.0120.279
ponAbe2.ensGene.LENGTH0.1080.0080.119
ponAbe2.geneSymbol.LENGTH0.0160.0040.022
ponAbe2.genscan.LENGTH0.0600.0040.062
ponAbe2.nscanGene.LENGTH0.0600.0000.061
ponAbe2.refGene.LENGTH0.0160.0040.022
ponAbe2.xenoRefGene.LENGTH0.6200.0000.618
priPac1.xenoRefGene.LENGTH0.3480.0000.347
rheMac2.ensGene.LENGTH0.1360.0120.150
rheMac2.geneSymbol.LENGTH0.0080.0000.008
rheMac2.geneid.LENGTH0.0680.0120.081
rheMac2.nscanGene.LENGTH0.0600.0000.058
rheMac2.refGene.LENGTH0.0080.0000.007
rheMac2.sgpGene.LENGTH0.0800.0040.085
rheMac2.xenoRefGene.LENGTH0.4080.0000.408
rn3.ensGene.LENGTH0.1120.0280.138
rn3.geneSymbol.LENGTH0.0880.0280.114
rn3.geneid.LENGTH0.0560.0000.057
rn3.genscan.LENGTH0.0720.0040.075
rn3.knownGene.LENGTH0.0160.0320.048
rn3.nscanGene.LENGTH0.0560.0000.058
rn3.refGene.LENGTH0.0760.0280.103
rn3.sgpGene.LENGTH0.0600.0040.064
rn3.xenoRefGene.LENGTH0.6040.0000.604
rn4.ensGene.LENGTH0.1240.0040.132
rn4.geneSymbol.LENGTH0.0760.0280.106
rn4.geneid.LENGTH0.1080.0120.118
rn4.genscan.LENGTH0.0640.0040.067
rn4.knownGene.LENGTH0.0280.0200.048
rn4.nscanGene.LENGTH0.3160.0400.355
rn4.refGene.LENGTH0.0720.0320.106
rn4.sgpGene.LENGTH0.0800.0360.116
rn4.xenoRefGene.LENGTH0.3480.0000.347
sacCer1.ensGene.LENGTH0.0240.0320.059
sacCer2.ensGene.LENGTH0.0360.0240.057
strPur1.geneSymbol.LENGTH0.0040.0040.010
strPur1.genscan.LENGTH0.0920.0080.100
strPur1.refGene.LENGTH0.0040.0040.011
strPur1.xenoRefGene.LENGTH0.7600.0000.762
strPur2.geneSymbol.LENGTH0.0000.0080.009
strPur2.genscan.LENGTH0.1480.0120.163
strPur2.refGene.LENGTH0.0040.0040.008
strPur2.xenoRefGene.LENGTH0.7760.0040.781
supportedGeneIDs0.1040.0003.732
supportedGenomes0.1280.0000.524
taeGut1.ensGene.LENGTH0.0720.0000.071
taeGut1.geneSymbol.LENGTH0.0000.0000.003
taeGut1.genscan.LENGTH0.0480.0200.071
taeGut1.nscanGene.LENGTH0.0360.0240.061
taeGut1.refGene.LENGTH0.0040.0000.003
taeGut1.xenoRefGene.LENGTH0.5600.0000.562
tetNig1.ensGene.LENGTH0.1160.0200.133
tetNig1.geneid.LENGTH0.0720.0080.083
tetNig1.genscan.LENGTH0.0800.0160.098
tetNig1.nscanGene.LENGTH0.0960.0000.095
tetNig2.ensGene.LENGTH0.0840.0120.094
unfactor0.0040.0000.003
xenTro1.genscan.LENGTH0.0840.0040.091
xenTro2.ensGene.LENGTH0.1160.0280.144
xenTro2.geneSymbol.LENGTH0.0360.0320.068
xenTro2.genscan.LENGTH0.0800.0360.118
xenTro2.refGene.LENGTH0.0560.0120.068