David Mosen-Ansorena
| Snapshot Date: 2020-04-14 09:30:11 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/facopy.annot |
| Branch: RELEASE_3_10 |
| Last Commit: c115349 |
| Last Changed Date: 2019-10-29 13:29:43 -0400 (Tue, 29 Oct 2019) |
| Back to Build/check report for BioC 3.10 experimental data |
This page was generated on 2020-04-14 17:46:23 -0400 (Tue, 14 Apr 2020).
| Package 113/384 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
David Mosen-Ansorena
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |
| Package: facopy.annot |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:facopy.annot.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings facopy.annot_1.6.0.tar.gz |
| StartedAt: 2020-04-14 13:23:06 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 13:24:02 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 56.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: facopy.annot.Rcheck |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:facopy.annot.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings facopy.annot_1.6.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/facopy.annot.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘facopy.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘facopy.annot’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘facopy.annot’ can be installed ... WARNING
Found the following significant warnings:
Warning: Package 'facopy.annot' is deprecated and will be removed from
See ‘/home/biocbuild/bbs-3.10-data-experiment/meat/facopy.annot.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.10-data-experiment/meat/facopy.annot.Rcheck/00check.log’
for details.
facopy.annot.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL facopy.annot ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘facopy.annot’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning: Package 'facopy.annot' is deprecated and will be removed from Bioconductor version 3.11 ** testing if installed package can be loaded from final location Warning: Package 'facopy.annot' is deprecated and will be removed from Bioconductor version 3.11 ** testing if installed package keeps a record of temporary installation path * DONE (facopy.annot)
facopy.annot.Rcheck/facopy.annot-Ex.timings
| name | user | system | elapsed | |
| hg18_armLimits | 0.008 | 0.004 | 0.013 | |
| hg18_db_gsk_bladder | 0.008 | 0.000 | 0.007 | |
| hg18_db_gsk_blood | 0.012 | 0.000 | 0.010 | |
| hg18_db_gsk_bone | 0.004 | 0.000 | 0.006 | |
| hg18_db_gsk_brain | 0.004 | 0.000 | 0.007 | |
| hg18_db_gsk_breast | 0.008 | 0.000 | 0.009 | |
| hg18_db_gsk_cervix | 0.008 | 0.000 | 0.007 | |
| hg18_db_gsk_cns | 0.008 | 0.000 | 0.009 | |
| hg18_db_gsk_colon | 0.008 | 0.000 | 0.009 | |
| hg18_db_gsk_connective_tissue | 0.008 | 0.000 | 0.007 | |
| hg18_db_gsk_esophagus | 0.008 | 0.000 | 0.007 | |
| hg18_db_gsk_eye | 0.004 | 0.000 | 0.002 | |
| hg18_db_gsk_kidney | 0.008 | 0.000 | 0.007 | |
| hg18_db_gsk_liver | 0.008 | 0.000 | 0.009 | |
| hg18_db_gsk_lung | 0.012 | 0.000 | 0.011 | |
| hg18_db_gsk_muscle | 0.000 | 0.004 | 0.007 | |
| hg18_db_gsk_ovary | 0.004 | 0.000 | 0.007 | |
| hg18_db_gsk_pancreas | 0.008 | 0.000 | 0.007 | |
| hg18_db_gsk_pharynx | 0.008 | 0.000 | 0.006 | |
| hg18_db_gsk_placenta | 0.004 | 0.000 | 0.006 | |
| hg18_db_gsk_prostate | 0.012 | 0.000 | 0.012 | |
| hg18_db_gsk_rectum | 0.004 | 0.000 | 0.005 | |
| hg18_db_gsk_sarcoma | 0.004 | 0.000 | 0.004 | |
| hg18_db_gsk_stomach | 0.008 | 0.000 | 0.006 | |
| hg18_db_gsk_synovium | 0.000 | 0.000 | 0.002 | |
| hg18_db_gsk_thyroid | 0.004 | 0.000 | 0.006 | |
| hg18_db_gsk_uterus | 0.008 | 0.000 | 0.006 | |
| hg18_db_nci60 | 0.012 | 0.000 | 0.010 | |
| hg18_db_tcga_blca | 0.008 | 0.000 | 0.010 | |
| hg18_db_tcga_brca | 0.012 | 0.000 | 0.010 | |
| hg18_db_tcga_cesc | 0.008 | 0.000 | 0.009 | |
| hg18_db_tcga_coad | 0.012 | 0.000 | 0.010 | |
| hg18_db_tcga_gbm | 0.008 | 0.000 | 0.010 | |
| hg18_db_tcga_hnsc | 0.012 | 0.000 | 0.010 | |
| hg18_db_tcga_kirc | 0.012 | 0.000 | 0.010 | |
| hg18_db_tcga_kirp | 0.008 | 0.000 | 0.010 | |
| hg18_db_tcga_lgg | 0.012 | 0.000 | 0.009 | |
| hg18_db_tcga_lihc | 0.008 | 0.000 | 0.010 | |
| hg18_db_tcga_luad | 0.012 | 0.000 | 0.010 | |
| hg18_db_tcga_lusc | 0.012 | 0.000 | 0.010 | |
| hg18_db_tcga_ov | 0.008 | 0.000 | 0.010 | |
| hg18_db_tcga_prad | 0.012 | 0.000 | 0.010 | |
| hg18_db_tcga_read | 0.008 | 0.000 | 0.010 | |
| hg18_db_tcga_stad | 0.004 | 0.004 | 0.010 | |
| hg18_db_tcga_thca | 0.008 | 0.000 | 0.009 | |
| hg18_db_tcga_ucec | 0.012 | 0.000 | 0.010 | |
| hg18_feature_cancergene | 0.004 | 0.000 | 0.003 | |
| hg18_feature_ensembl | 0.060 | 0.000 | 0.061 | |
| hg18_feature_lincRNA | 0.008 | 0.000 | 0.011 | |
| hg18_feature_mirnas | 0.000 | 0.000 | 0.003 | |
| hg18_feature_oncogene | 0.004 | 0.000 | 0.003 | |
| hg18_feature_tumorsupressor | 0.004 | 0.000 | 0.002 | |
| hg19_armLimits | 0.000 | 0.000 | 0.001 | |
| hg19_db_gsk_bladder | 0.012 | 0.004 | 0.015 | |
| hg19_db_gsk_blood | 0.012 | 0.000 | 0.010 | |
| hg19_db_gsk_bone | 0.004 | 0.000 | 0.005 | |
| hg19_db_gsk_brain | 0.008 | 0.000 | 0.007 | |
| hg19_db_gsk_breast | 0.012 | 0.000 | 0.009 | |
| hg19_db_gsk_cervix | 0.000 | 0.004 | 0.007 | |
| hg19_db_gsk_cns | 0.008 | 0.000 | 0.008 | |
| hg19_db_gsk_colon | 0.008 | 0.000 | 0.008 | |
| hg19_db_gsk_connective_tissue | 0.008 | 0.000 | 0.006 | |
| hg19_db_gsk_esophagus | 0.004 | 0.000 | 0.007 | |
| hg19_db_gsk_eye | 0.000 | 0.000 | 0.002 | |
| hg19_db_gsk_kidney | 0.008 | 0.000 | 0.007 | |
| hg19_db_gsk_liver | 0.008 | 0.000 | 0.008 | |
| hg19_db_gsk_lung | 0.012 | 0.000 | 0.010 | |
| hg19_db_gsk_muscle | 0.004 | 0.000 | 0.006 | |
| hg19_db_gsk_ovary | 0.008 | 0.000 | 0.007 | |
| hg19_db_gsk_pancreas | 0.008 | 0.000 | 0.007 | |
| hg19_db_gsk_pharynx | 0.008 | 0.000 | 0.006 | |
| hg19_db_gsk_placenta | 0.000 | 0.004 | 0.006 | |
| hg19_db_gsk_prostate | 0.008 | 0.000 | 0.008 | |
| hg19_db_gsk_rectum | 0.008 | 0.000 | 0.006 | |
| hg19_db_gsk_sarcoma | 0.004 | 0.000 | 0.004 | |
| hg19_db_gsk_stomach | 0.008 | 0.000 | 0.006 | |
| hg19_db_gsk_synovium | 0.000 | 0.000 | 0.002 | |
| hg19_db_gsk_thyroid | 0.008 | 0.000 | 0.006 | |
| hg19_db_gsk_uterus | 0.008 | 0.000 | 0.007 | |
| hg19_db_nci60 | 0.012 | 0.000 | 0.010 | |
| hg19_db_tcga_blca | 0.008 | 0.000 | 0.010 | |
| hg19_db_tcga_brca | 0.012 | 0.000 | 0.011 | |
| hg19_db_tcga_cesc | 0.012 | 0.000 | 0.010 | |
| hg19_db_tcga_coad | 0.008 | 0.000 | 0.010 | |
| hg19_db_tcga_gbm | 0.008 | 0.000 | 0.010 | |
| hg19_db_tcga_hnsc | 0.012 | 0.000 | 0.011 | |
| hg19_db_tcga_kirc | 0.008 | 0.000 | 0.010 | |
| hg19_db_tcga_kirp | 0.008 | 0.000 | 0.010 | |
| hg19_db_tcga_lgg | 0.012 | 0.000 | 0.009 | |
| hg19_db_tcga_lihc | 0.008 | 0.000 | 0.010 | |
| hg19_db_tcga_luad | 0.012 | 0.000 | 0.011 | |
| hg19_db_tcga_lusc | 0.012 | 0.000 | 0.011 | |
| hg19_db_tcga_ov | 0.012 | 0.000 | 0.014 | |
| hg19_db_tcga_prad | 0.008 | 0.000 | 0.009 | |
| hg19_db_tcga_read | 0.012 | 0.000 | 0.010 | |
| hg19_db_tcga_stad | 0.004 | 0.004 | 0.010 | |
| hg19_db_tcga_thca | 0.012 | 0.000 | 0.008 | |
| hg19_db_tcga_ucec | 0.004 | 0.004 | 0.010 | |
| hg19_feature_cancergene | 0.000 | 0.000 | 0.003 | |
| hg19_feature_ensembl | 0.124 | 0.000 | 0.128 | |
| hg19_feature_lincRNA | 0.008 | 0.000 | 0.011 | |
| hg19_feature_mirnas | 0.008 | 0.000 | 0.006 | |
| hg19_feature_oncogene | 0.000 | 0.000 | 0.002 | |
| hg19_feature_tumorsupressor | 0.000 | 0.000 | 0.002 | |
| mm8_armLimits | 0.004 | 0.000 | 0.001 | |
| mm8_feature_ensembl | 0.136 | 0.000 | 0.140 | |
| mm8_feature_mirnas | 0.004 | 0.000 | 0.004 | |