Back to Build/check report for BioC 3.10 experimental data

CHECK report for breastCancerUPP on malbec1

This page was generated on 2020-04-14 17:46:18 -0400 (Tue, 14 Apr 2020).

Package 40/384HostnameOS / ArchINSTALLBUILDCHECK
breastCancerUPP 1.24.0
Markus Schroeder , Benjamin Haibe-Kains
Snapshot Date: 2020-04-14 09:30:11 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/breastCancerUPP
Branch: RELEASE_3_10
Last Commit: b3b61db
Last Changed Date: 2019-10-29 13:29:36 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: breastCancerUPP
Version: 1.24.0
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:breastCancerUPP.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings breastCancerUPP_1.24.0.tar.gz
StartedAt: 2020-04-14 13:03:21 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 13:05:46 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 145.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: breastCancerUPP.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:breastCancerUPP.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings breastCancerUPP_1.24.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/breastCancerUPP.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘breastCancerUPP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘breastCancerUPP’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘breastCancerUPP’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 30.4Mb
  sub-directories of 1Mb or more:
    data  30.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
          old_size new_size compress
  upp.rda   30.3Mb   21.4Mb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.10-data-experiment/meat/breastCancerUPP.Rcheck/00check.log’
for details.



Installation output

breastCancerUPP.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL breastCancerUPP
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘breastCancerUPP’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (breastCancerUPP)

Tests output


Example timings

breastCancerUPP.Rcheck/breastCancerUPP-Ex.timings

nameusersystemelapsed
upp1.5640.0561.619