Antti Honkela
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/tigre |
| Branch: RELEASE_3_10 |
| Last Commit: 8735a46 |
| Last Changed Date: 2019-10-29 13:08:14 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:36:19 -0400 (Wed, 15 Apr 2020).
| Package 1721/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| tigre 1.40.0 Antti Honkela
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: tigre |
| Version: 1.40.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:tigre.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings tigre_1.40.0.tar.gz |
| StartedAt: 2020-04-15 06:07:33 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 06:10:07 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 154.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: tigre.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:tigre.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings tigre_1.40.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/tigre.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tigre/DESCRIPTION’ ... OK
* this is package ‘tigre’ version ‘1.40.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tigre’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
processData 7.496 0.284 7.822
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.10-bioc/meat/tigre.Rcheck/00check.log’
for details.
tigre.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL tigre ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘tigre’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c miscCFunctions.c -o miscCFunctions.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o tigre.so miscCFunctions.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-tigre/00new/tigre/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tigre)
tigre.Rcheck/tigre-Ex.timings
| name | user | system | elapsed | |
| ExpressionTimeSeries-class | 0.002 | 0.000 | 0.004 | |
| GPLearn | 1.453 | 0.081 | 1.592 | |
| GPModel-class | 0.000 | 0.000 | 0.001 | |
| GPPlot | 0 | 0 | 0 | |
| GPRankTargets | 0.000 | 0.000 | 0.001 | |
| SCGoptim | 0 | 0 | 0 | |
| expTransform | 0.001 | 0.000 | 0.000 | |
| export | 0.001 | 0.000 | 0.000 | |
| generateModels | 0.000 | 0.000 | 0.001 | |
| gpsimCreate | 0.000 | 0.001 | 0.001 | |
| kernCompute | 0 | 0 | 0 | |
| kernCreate | 0.008 | 0.001 | 0.009 | |
| kernDiagGradX | 0.001 | 0.000 | 0.001 | |
| kernGradient | 0.001 | 0.000 | 0.001 | |
| lnDiffErfs | 0.000 | 0.000 | 0.001 | |
| modelDisplay | 0.126 | 0.015 | 0.141 | |
| modelExpandParam | 0.000 | 0.001 | 0.000 | |
| modelExtractParam | 0.132 | 0.008 | 0.141 | |
| modelGradient | 0.119 | 0.009 | 0.128 | |
| modelTieParam | 0.009 | 0.000 | 0.009 | |
| optimiDefaultConstraint | 0.000 | 0.000 | 0.001 | |
| plotTimeseries | 0.159 | 0.007 | 0.167 | |
| processData | 7.496 | 0.284 | 7.822 | |
| scoreList-class | 0.001 | 0.000 | 0.001 | |
| tigre-package | 0.000 | 0.000 | 0.001 | |