Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:37:28 -0400 (Wed, 15 Apr 2020).
Package 1583/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
sigaR 1.34.0 Wessel N. van Wieringen
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: sigaR |
Version: 1.34.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:sigaR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings sigaR_1.34.0.tar.gz |
StartedAt: 2020-04-15 05:41:17 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 05:45:40 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 262.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: sigaR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:sigaR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings sigaR_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/sigaR.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘sigaR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘sigaR’ version ‘1.34.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sigaR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: ‘.alphabivariate’ ‘.alphaest’ ‘.pretest’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed mutInfTest 101.189 15.137 118.312 cisEffectTune 18.451 0.282 19.090 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.10-bioc/meat/sigaR.Rcheck/00check.log’ for details.
sigaR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL sigaR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘sigaR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sigaR)
sigaR.Rcheck/sigaR-Ex.timings
name | user | system | elapsed | |
CNGEheatmaps | 1.056 | 0.018 | 1.079 | |
ExpressionSet2order | 0.013 | 0.002 | 0.016 | |
ExpressionSet2subset | 0.015 | 0.001 | 0.019 | |
ExpressionSet2weightedSubset | 0.299 | 0.002 | 0.303 | |
RCMestimation | 1.237 | 0.094 | 1.401 | |
RCMrandom | 1.061 | 0.034 | 1.114 | |
RCMtest | 4.16 | 0.08 | 4.34 | |
cghCall2cghSeg | 0.075 | 0.001 | 0.077 | |
cghCall2maximumSubset | 0.410 | 0.005 | 0.419 | |
cghCall2order | 0.019 | 0.001 | 0.020 | |
cghCall2subset | 0.056 | 0.002 | 0.059 | |
cghCall2weightedSubset | 0.361 | 0.004 | 0.372 | |
cghSeg2order | 0.055 | 0.002 | 0.057 | |
cghSeg2subset | 0.083 | 0.002 | 0.085 | |
cghSeg2weightedSubset | 0.322 | 0.003 | 0.329 | |
cisEffectPlot | 0.083 | 0.003 | 0.086 | |
cisEffectTable | 2.057 | 0.076 | 2.149 | |
cisEffectTest | 1.971 | 0.050 | 2.042 | |
cisEffectTune | 18.451 | 0.282 | 19.090 | |
cisTest-class | 0.002 | 0.000 | 0.002 | |
entTest-class | 0.001 | 0.001 | 0.001 | |
entropyTest | 0.262 | 0.003 | 0.270 | |
expandMatching2singleIDs | 0.043 | 0.004 | 0.047 | |
getSegFeatures | 0.009 | 0.002 | 0.010 | |
hdEntropy | 0.012 | 0.002 | 0.014 | |
hdMI | 0.659 | 0.007 | 0.680 | |
matchAnn2Ann | 0.037 | 0.003 | 0.040 | |
matchCGHcall2ExpressionSet | 0.048 | 0.004 | 0.051 | |
merge2ExpressionSets | 0.058 | 0.002 | 0.060 | |
merge2cghCalls | 0.079 | 0.002 | 0.081 | |
miTest-class | 0.001 | 0.000 | 0.001 | |
mutInfTest | 101.189 | 15.137 | 118.312 | |
nBreakpoints | 0.245 | 0.006 | 0.258 | |
pathway1sample | 0.117 | 0.006 | 0.124 | |
pathway2sample | 2.944 | 0.643 | 3.668 | |
pathwayFit-class | 0.001 | 0.000 | 0.001 | |
pathwayPlot | 0.071 | 0.010 | 0.083 | |
pollackCN16 | 0.003 | 0.001 | 0.004 | |
pollackGE16 | 0.003 | 0.002 | 0.005 | |
profilesPlot | 0.130 | 0.003 | 0.133 | |
rcmFit-class | 0.001 | 0.000 | 0.001 | |
rcmTest-class | 0.001 | 0.000 | 0.002 | |
splitMatchingAtBreakpoints | 0.275 | 0.016 | 0.291 | |
uniqGenomicInfo | 0.009 | 0.003 | 0.012 | |