Hector Climente-Gonzalez
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/martini |
| Branch: RELEASE_3_10 |
| Last Commit: 4f0f2b9 |
| Last Changed Date: 2019-10-29 13:10:59 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:29:57 -0400 (Wed, 15 Apr 2020).
| Package 954/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| martini 1.6.0 Hector Climente-Gonzalez
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: martini |
| Version: 1.6.0 |
| Command: rm -rf martini.buildbin-libdir && mkdir martini.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=martini.buildbin-libdir martini_1.6.0.tar.gz |
| StartedAt: 2020-04-15 09:05:19 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 09:06:40 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 81.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: martini_1.6.0.zip |
| PackageFileSize: 1.364 MiB |
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### Running command:
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### rm -rf martini.buildbin-libdir && mkdir martini.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=martini.buildbin-libdir martini_1.6.0.tar.gz
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install for i386
* installing *source* package 'martini' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c evo.cpp -o evo.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c run_scones.cpp -o run_scones.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o evo.o run_scones.o C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/usrlib/i386/libgin.a C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/usrlib/i386/libmaxflow.a C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/usrlib/i386/libcephes.a -lz -pthread -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'martini'
finding HTML links ... done
arrange_covars html
calculateE html
calculateG html
check_installed html
encode_gwas html
evo html
get_GI_network html
get_GM_network html
get_GS_network html
get_evo_settings html
get_ppi html
get_snp_modules html
is_coherent html
ldweight_edges html
minigwas html
minippi html
minisnpMapping html
parse_scones_settings html
permute_snpMatrix html
run_scones html
scones html
scones.cv html
score_fold html
search_cones html
simulate_causal_snps html
simulate_phenotype html
single_snp_association html
snp2gene html
subnet html
subvert html
test_cones_modules html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'martini' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c evo.cpp -o evo.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c run_scones.cpp -o run_scones.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o evo.o run_scones.o C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/usrlib/x64/libgin.a C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/usrlib/x64/libmaxflow.a C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rgin/usrlib/x64/libcephes.a -lz -pthread -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/martini.buildbin-libdir/martini/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'martini' as martini_1.6.0.zip
* DONE (martini)