Package: hopach

Version: 2.46.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/hopach_2.46.0.tar.gz && rm -rf hopach.buildbin-libdir && mkdir hopach.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hopach.buildbin-libdir hopach_2.46.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL hopach_2.46.0.zip && rm hopach_2.46.0.tar.gz hopach_2.46.0.zip

StartedAt: 2020-04-14 18:37:10 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 18:37:39 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 29.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/hopach_2.46.0.tar.gz && rm -rf hopach.buildbin-libdir && mkdir hopach.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hopach.buildbin-libdir hopach_2.46.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL hopach_2.46.0.zip && rm hopach_2.46.0.tar.gz hopach_2.46.0.zip
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install for i386

* installing *source* package 'hopach' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c Rdistances.c -o Rdistances.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c hdist.c -o hdist.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o hopach.dll tmp.def Rdistances.o hdist.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/hopach.buildbin-libdir/00LOCK-hopach/00new/hopach/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function from function 'as.hdist' in package 'hopach'
** help
*** installing help indices
  converting help for package 'hopach'
    finding HTML links ... done
    boot2fuzzy                              html  
    bootplot                                html  
    bootstrap                               html  
    correlationordering                     html  
    disscosangle                            html  
    distancematrix                          html  
    dplot                                   html  
    golub                                   html  
    hdist-class                             html  
    hopach                                  html  
    hopach.internal                         html  
    hopach2tree                             html  
    labelstomss                             html  
    makeoutput                              html  
    prune                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'hopach' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c Rdistances.c -o Rdistances.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c hdist.c -o hdist.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o hopach.dll tmp.def Rdistances.o hdist.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/hopach.buildbin-libdir/hopach/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hopach' as hopach_2.46.0.zip
* DONE (hopach)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'hopach' successfully unpacked and MD5 sums checked