Back to Multiple platform build/check report for BioC 3.10
ABCDEFGHIJKLMNOPQRSTU[V]WXYZ

BUILD BIN report for VanillaICE on merida1

This page was generated on 2020-04-15 12:35:14 -0400 (Wed, 15 Apr 2020).

Package 1782/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VanillaICE 1.48.0
Robert Scharpf
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/VanillaICE
Branch: RELEASE_3_10
Last Commit: 66aba0a
Last Changed Date: 2019-10-29 13:07:52 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: VanillaICE
Version: 1.48.0
Command: rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.48.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R VanillaICE.buildbin-libdir
StartedAt: 2020-04-15 09:03:29 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 09:04:22 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 53.6 seconds
RetCode: 0
Status:  OK 
PackageFile: VanillaICE_1.48.0.tgz
PackageFileSize: 2.402 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.48.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R VanillaICE.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=VanillaICE.buildbin-libdir VanillaICE_1.48.0.tar.gz'
>>>>>>> 

* installing *source* package ‘VanillaICE’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c rinit.c -o rinit.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c viterbi.c -o viterbi.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VanillaICE.so rinit.o viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.10-bioc/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘distance’ in package ‘VanillaICE’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (VanillaICE)


>>>>>>> 
>>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"