Multiple platform build/check report for BioC 3.10 - CHECK report for RedeR on merida1

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.34.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/RedeR.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.10-bioc/meat/RedeR.Rcheck/00check.log’
for details.

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RedeR
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘RedeR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)

Tests output

Example timings

name	user	system	elapsed
RedPort-class	0.004	0.001	0.004
RedPort	0	0	0
RedeR.data	0.481	0.035	0.519
addEdgeBetweenContainers	0.015	0.002	0.017
addEdges	0.012	0.001	0.014
addGraph	0.009	0.001	0.010
addLegend	0.012	0.001	0.014
addNodes	0.009	0.001	0.010
addSeries	0.020	0.002	0.023
addSubgraph	0.010	0.000	0.011
addSubgraph.list	0.011	0.000	0.013
att	0.037	0.002	0.039
calld	0.000	0.000	0.001
cea	0.018	0.002	0.019
deSelectEdges	0.008	0.001	0.009
deSelectGraph	0.016	0.001	0.017
deSelectNodes	0.011	0.001	0.012
deleteEdges	0.012	0.001	0.013
deleteNodes	0.012	0.001	0.013
deleteSelectedEdges	0.009	0.001	0.010
deleteSelectedNodes	0.008	0.000	0.008
duplicateGraph	0.008	0.001	0.008
exitd	0.001	0.000	0.000
getContainerComponets	0.010	0.000	0.011
getEdgeIDs	0.013	0.000	0.014
getEdges	0.010	0.000	0.011
getGraph	0.009	0.000	0.010
getNodeIDs	0.012	0.000	0.013
getNodes	0.012	0.000	0.012
getSourceEdgeIDs	0.010	0.000	0.011
getTargetEdgeIDs	0.012	0.000	0.013
gtoy.rm	0.000	0.000	0.001
isDynamicsActive	0.000	0.000	0.001
mergeNodes	0.011	0.001	0.011
mergeOutEdges	0.013	0.001	0.014
nestNodes	0.013	0.001	0.014
nesthc	1.389	0.072	1.472
ping	0.001	0.001	0.001
relax	0.010	0.001	0.011
resetd	0.001	0.001	0.001
selectAllEdges	0.012	0.001	0.014
selectAllNodes	0.011	0.001	0.013
selectEdges	0.012	0.001	0.014
selectGraph	0.014	0.002	0.016
selectNodes	0.013	0.002	0.014
setArrowDirection	0.013	0.001	0.014
subg	0.054	0.008	0.064
updateContainerSize	0.010	0.002	0.011
updateGraph	0.011	0.002	0.012
version	0.000	0.000	0.001

CHECK report for RedeR on merida1

Summary

Command output

Installation output

Tests output

Example timings