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INSTALL report for PCAtools on tokay1

This page was generated on 2020-04-15 12:31:40 -0400 (Wed, 15 Apr 2020).

Package 1238/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PCAtools 1.2.0
Kevin Blighe
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/PCAtools
Branch: RELEASE_3_10
Last Commit: 638f4c1
Last Changed Date: 2019-10-29 13:11:28 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PCAtools
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/PCAtools_1.2.0.tar.gz && rm -rf PCAtools.buildbin-libdir && mkdir PCAtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCAtools.buildbin-libdir PCAtools_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL PCAtools_1.2.0.zip && rm PCAtools_1.2.0.tar.gz PCAtools_1.2.0.zip
StartedAt: 2020-04-14 20:16:11 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:17:26 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 75.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/PCAtools_1.2.0.tar.gz && rm -rf PCAtools.buildbin-libdir && mkdir PCAtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCAtools.buildbin-libdir PCAtools_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL PCAtools_1.2.0.zip && rm PCAtools_1.2.0.tar.gz PCAtools_1.2.0.zip
###
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install for i386

* installing *source* package 'PCAtools' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/dqrng/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/dqrng/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c shuffle_matrix.cpp -o shuffle_matrix.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o PCAtools.dll tmp.def RcppExports.o shuffle_matrix.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/PCAtools.buildbin-libdir/00LOCK-PCAtools/00new/PCAtools/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PCAtools'
    finding HTML links ... done
    PCAtools-package                        html  
    biplot                                  html  
    finding level-2 HTML links ... done

    eigencorplot                            html  
    findElbowPoint                          html  
    getComponents                           html  
    getLoadings                             html  
    getVars                                 html  
    pairsplot                               html  
    parallelPCA                             html  
    pca                                     html  
    plotloadings                            html  
    screeplot                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PCAtools' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/dqrng/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/dqrng/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c shuffle_matrix.cpp -o shuffle_matrix.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o PCAtools.dll tmp.def RcppExports.o shuffle_matrix.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/PCAtools.buildbin-libdir/PCAtools/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PCAtools' as PCAtools_1.2.0.zip
* DONE (PCAtools)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'PCAtools' successfully unpacked and MD5 sums checked