Back to Multiple platform build/check report for BioC 3.10
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

BUILD BIN report for PAST on tokay1

This page was generated on 2020-04-15 12:32:32 -0400 (Wed, 15 Apr 2020).

Package 1221/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PAST 1.2.8
Thrash Adam
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/PAST
Branch: RELEASE_3_10
Last Commit: 5072e56
Last Changed Date: 2020-03-16 09:18:26 -0400 (Mon, 16 Mar 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: PAST
Version: 1.2.8
Command: rm -rf PAST.buildbin-libdir && mkdir PAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PAST.buildbin-libdir PAST_1.2.8.tar.gz
StartedAt: 2020-04-15 09:20:31 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 09:21:37 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 66.0 seconds
RetCode: 0
Status:  OK  
PackageFile: PAST_1.2.8.zip
PackageFileSize: 1019 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf PAST.buildbin-libdir && mkdir PAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PAST.buildbin-libdir PAST_1.2.8.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'PAST' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** help
*** installing help indices
  converting help for package 'PAST'
    finding HTML links ... done
    assign_SNPs_to_genes                    html  
    assign_chunk                            html  
    determine_linkage                       html  
    find_pathway_significance               html  
    find_representative_SNP                 html  
    find_representative_SNP_gene_pairing    html  
    load_GWAS_data                          html  
    load_LD                                 html  
    plot_pathways                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PAST' ...
** testing if installed package can be loaded
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
* MD5 sums
packaged installation of 'PAST' as PAST_1.2.8.zip
* DONE (PAST)