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INSTALL report for NanoStringDiff on tokay1

This page was generated on 2020-04-15 12:25:19 -0400 (Wed, 15 Apr 2020).

Package 1130/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NanoStringDiff 1.16.0
tingting zhai ,hong wang
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/NanoStringDiff
Branch: RELEASE_3_10
Last Commit: 1f10952
Last Changed Date: 2019-10-29 13:09:22 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: NanoStringDiff
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/NanoStringDiff_1.16.0.tar.gz && rm -rf NanoStringDiff.buildbin-libdir && mkdir NanoStringDiff.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NanoStringDiff.buildbin-libdir NanoStringDiff_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL NanoStringDiff_1.16.0.zip && rm NanoStringDiff_1.16.0.tar.gz NanoStringDiff_1.16.0.zip
StartedAt: 2020-04-14 18:38:45 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:40:06 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 81.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/NanoStringDiff_1.16.0.tar.gz && rm -rf NanoStringDiff.buildbin-libdir && mkdir NanoStringDiff.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NanoStringDiff.buildbin-libdir NanoStringDiff_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL NanoStringDiff_1.16.0.zip && rm NanoStringDiff_1.16.0.tar.gz NanoStringDiff_1.16.0.zip
###
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100  314k  100  314k    0     0  7342k      0 --:--:-- --:--:-- --:--:-- 8058k

install for i386

* installing *source* package 'NanoStringDiff' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c fun5.cpp -o fun5.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o NanoStringDiff.dll tmp.def RcppExports.o fun5.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/NanoStringDiff.buildbin-libdir/00LOCK-NanoStringDiff/00new/NanoStringDiff/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'NanoStringDiff'
    finding HTML links ... done
    NanoStringData                          html  
    NanoStringDataNormalization             html  
    NanoStringDiff-class                    html  
    NanoStringDiff-package                  html  
    PlotsPositiveHousekeeping               html  
    estNormalizationFactors                 html  
    glm.LRT                                 html  
    housekeepingControl                     html  
    housekeepingFactor                      html  
    negativeControl                         html  
    negativeFactor                          html  
    positiveControl                         html  
    positiveFactor                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'NanoStringDiff' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c fun5.cpp -o fun5.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o NanoStringDiff.dll tmp.def RcppExports.o fun5.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/NanoStringDiff.buildbin-libdir/NanoStringDiff/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NanoStringDiff' as NanoStringDiff_1.16.0.zip
* DONE (NanoStringDiff)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'NanoStringDiff' successfully unpacked and MD5 sums checked