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INSTALL report for MADSEQ on tokay1

This page was generated on 2020-04-15 12:26:48 -0400 (Wed, 15 Apr 2020).

Package 941/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MADSEQ 1.12.0
Yu Kong
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/MADSEQ
Branch: RELEASE_3_10
Last Commit: d450e4e
Last Changed Date: 2019-10-29 13:09:44 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MADSEQ
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/MADSEQ_1.12.0.tar.gz && rm -rf MADSEQ.buildbin-libdir && mkdir MADSEQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MADSEQ.buildbin-libdir MADSEQ_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL MADSEQ_1.12.0.zip && rm MADSEQ_1.12.0.tar.gz MADSEQ_1.12.0.zip
StartedAt: 2020-04-14 20:05:15 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:06:26 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 71.5 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/MADSEQ_1.12.0.tar.gz && rm -rf MADSEQ.buildbin-libdir && mkdir MADSEQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MADSEQ.buildbin-libdir MADSEQ_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL MADSEQ_1.12.0.zip && rm MADSEQ_1.12.0.tar.gz MADSEQ_1.12.0.zip
###
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100 2122k  100 2122k    0     0  15.4M      0 --:--:-- --:--:-- --:--:-- 15.9M

install for i386

* installing *source* package 'MADSEQ' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MADSEQ'
    finding HTML links ... done
    MADSEQ-package                          html  
    MadSeq                                  html  
    aneuploidy_chr18                        html  
    deltaBIC                                html  
    normalizeCoverage                       html  
    finding level-2 HTML links ... done

    plotFraction                            html  
    plotMadSeq                              html  
    plotMixture                             html  
    posterior                               html  
    prepareCoverageGC                       html  
    prepareHetero                           html  
    runMadSeq                               html  
    summary-method                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MADSEQ' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MADSEQ' as MADSEQ_1.12.0.zip
* DONE (MADSEQ)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'MADSEQ' successfully unpacked and MD5 sums checked