Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:12:28 -0400 (Wed, 15 Apr 2020).
Package 854/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
IntEREst 1.10.2 Ali Oghabian
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: IntEREst |
Version: 1.10.2 |
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:IntEREst.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings IntEREst_1.10.2.tar.gz |
StartedAt: 2020-04-15 04:39:46 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 04:46:12 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 386.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: IntEREst.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:IntEREst.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings IntEREst_1.10.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/IntEREst.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IntEREst/DESCRIPTION’ ... OK * this is package ‘IntEREst’ version ‘1.10.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘IntEREst’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Found the following apparent S3 methods exported but not registered: plot.InterestResult See section ‘Registering S3 methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed DEXSeqIntEREst 35.996 0.168 36.412 deseqInterest 8.892 0.004 9.000 annotateU12 4.888 0.028 5.018 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.10-bioc/meat/IntEREst.Rcheck/00check.log’ for details.
IntEREst.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL IntEREst ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘IntEREst’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IntEREst)
IntEREst.Rcheck/IntEREst-Ex.timings
name | user | system | elapsed | |
DEXSeqIntEREst | 35.996 | 0.168 | 36.412 | |
addAnnotation | 0.048 | 0.000 | 0.047 | |
annotateU12 | 4.888 | 0.028 | 5.018 | |
applyOverlap | 0.244 | 0.000 | 0.244 | |
attributes | 0.052 | 0.000 | 0.053 | |
boxplot-method | 0.104 | 0.000 | 0.107 | |
buildSsTypePwms | 0.000 | 0.000 | 0.001 | |
counts-method | 0.040 | 0.000 | 0.038 | |
deseqInterest | 8.892 | 0.004 | 9.000 | |
exactTestInterest | 0.172 | 0.000 | 0.173 | |
getRepeatTable | 0 | 0 | 0 | |
glmInterest | 0.244 | 0.000 | 0.244 | |
interest | 2.044 | 0.004 | 2.162 | |
interest.sequential | 1.844 | 0.016 | 1.871 | |
interestResult | 0.020 | 0.000 | 0.022 | |
interestResultIntEx | 0.212 | 0.000 | 0.210 | |
intexIndex | 0.004 | 0.000 | 0.006 | |
lfc | 0.360 | 0.000 | 0.364 | |
mergeInterestResult | 0.332 | 0.000 | 0.333 | |
plot-method | 0.440 | 0.000 | 0.442 | |
psi | 1.324 | 0.012 | 1.338 | |
qlfInterest | 0.328 | 0.012 | 0.339 | |
readInterestResults | 0.036 | 0.000 | 0.038 | |
referencePrepare | 1.532 | 0.008 | 1.545 | |
subInterestResult | 0.036 | 0.000 | 0.035 | |
treatInterest | 0.204 | 0.000 | 0.202 | |
u12Boxplot | 0.092 | 0.000 | 0.094 | |
u12BoxplotNb | 0.128 | 0.000 | 0.126 | |
u12DensityPlot | 0.372 | 0.004 | 0.377 | |
u12Index | 0.008 | 0.000 | 0.010 | |
u12NbIndex | 0.096 | 0.000 | 0.096 | |
unionRefTr | 0.020 | 0.000 | 0.018 | |
updateRowDataCol | 0.052 | 0.000 | 0.052 | |