Liz Ing-Simmons
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/GenomicInteractions |
| Branch: RELEASE_3_10 |
| Last Commit: 941a58c |
| Last Changed Date: 2020-04-10 06:19:43 -0400 (Fri, 10 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:23:43 -0400 (Wed, 15 Apr 2020).
| Package 683/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenomicInteractions 1.20.3 Liz Ing-Simmons
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GenomicInteractions |
| Version: 1.20.3 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GenomicInteractions_1.20.3.tar.gz && rm -rf GenomicInteractions.buildbin-libdir && mkdir GenomicInteractions.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicInteractions.buildbin-libdir GenomicInteractions_1.20.3.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GenomicInteractions_1.20.3.zip && rm GenomicInteractions_1.20.3.tar.gz GenomicInteractions_1.20.3.zip |
| StartedAt: 2020-04-14 20:13:45 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:16:24 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 159.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GenomicInteractions_1.20.3.tar.gz && rm -rf GenomicInteractions.buildbin-libdir && mkdir GenomicInteractions.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicInteractions.buildbin-libdir GenomicInteractions_1.20.3.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GenomicInteractions_1.20.3.zip && rm GenomicInteractions_1.20.3.tar.gz GenomicInteractions_1.20.3.zip
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install for i386
* installing *source* package 'GenomicInteractions' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicInteractions'
finding HTML links ... done
GInteractions-subsetByFeatures-methods
html
GenomicInteractions-class html
GenomicInteractions-package html
GenomicInteractions html
InteractionHelpers html
InteractionTrack-class html
InteractionTrack html
annotateInteractions html
annotateRegions html
asBED-GInteractions-method html
availableDisplayPars html
calculateDistances html
categoriseInteractions html
countsBetweenAnchors-methods html
dot-importHicLib html
dot-importHomer html
dot-processChiapetName html
dot-readBam html
dot-readTwoBams html
dot-validateInput html
export.bed12 html
export.bedpe html
export.chiasig html
export.igraph html
get_binom_ligation_threshold html
get_self_ligation_threshold html
getters html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpCWnX4N/R.INSTALL2c87e9f4171/GenomicInteractions/man/getters.Rd:43: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
hg19.refseq.transcripts html
hic_example_data html
makeGenomicInteractionsFromFile html
mm9_refseq_promoters html
plotAvgViewpoint html
plotCisTrans html
plotCounts html
plotDists html
plotInteractionAnnotations html
plotSummaryStats html
plotViewpoint html
removeDups html
resetAnnotations html
sameStrand html
setters html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpCWnX4N/R.INSTALL2c87e9f4171/GenomicInteractions/man/setters.Rd:27: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
sum-GInteractions-method html
summariseByFeaturePairs html
summariseByFeatures html
thymus_enh html
updateObject-GenomicInteractions-method
html
viewPoint html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GenomicInteractions' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicInteractions' as GenomicInteractions_1.20.3.zip
* DONE (GenomicInteractions)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'GenomicInteractions' successfully unpacked and MD5 sums checked