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CHECK report for GSRI on tokay1

This page was generated on 2020-04-15 12:19:17 -0400 (Wed, 15 Apr 2020).

Package 759/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSRI 2.34.0
Julian Gehring
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/GSRI
Branch: RELEASE_3_10
Last Commit: 91d87fe
Last Changed Date: 2019-10-29 13:08:15 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ WARNINGS ] OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GSRI
Version: 2.34.0
Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GSRI.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings GSRI_2.34.0.tar.gz
StartedAt: 2020-04-15 03:46:42 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 03:49:20 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 158.8 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: GSRI.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GSRI.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings GSRI_2.34.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/GSRI.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSRI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GSRI' version '2.34.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSRI' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:60: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:61: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:62: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:66: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:67: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:68: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:69: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-package.Rd:80: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-package.Rd:81: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-package.Rd:82: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-package.Rd:86: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-package.Rd:87: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-package.Rd:88: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-package.Rd:89: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/Gsri-class.Rd:144: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/Gsri-class.Rd:145: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/Gsri-class.Rd:146: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/Gsri-class.Rd:150: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/Gsri-class.Rd:151: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/Gsri-class.Rd:152: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/Gsri-class.Rd:153: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/export.Rd:49: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/export.Rd:50: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/export.Rd:51: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/export.Rd:55: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/export.Rd:56: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/export.Rd:57: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/export.Rd:58: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/get-methods.Rd:78: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/get-methods.Rd:79: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/get-methods.Rd:80: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/get-methods.Rd:84: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/get-methods.Rd:85: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/get-methods.Rd:86: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/get-methods.Rd:87: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/gsri.Rd:228: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/gsri.Rd:229: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/gsri.Rd:230: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/gsri.Rd:234: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/gsri.Rd:235: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/gsri.Rd:236: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/gsri.Rd:237: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/plot.Rd:91: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/plot.Rd:92: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/plot.Rd:93: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/plot.Rd:97: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/plot.Rd:98: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/plot.Rd:99: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/plot.Rd:100: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/read-functions.Rd:63: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/read-functions.Rd:64: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/read-functions.Rd:65: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/read-functions.Rd:69: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/read-functions.Rd:70: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/read-functions.Rd:71: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/read-functions.Rd:72: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/sortGsri.Rd:62: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/sortGsri.Rd:63: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/sortGsri.Rd:64: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/sortGsri.Rd:68: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/sortGsri.Rd:69: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/sortGsri.Rd:70: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/sortGsri.Rd:71: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/test-functions.Rd:97: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/test-functions.Rd:98: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/test-functions.Rd:99: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/test-functions.Rd:103: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/test-functions.Rd:104: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/test-functions.Rd:105: file link 'readCls' in package 'GSRI' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/test-functions.Rd:106: file link 'readGct' in package 'GSRI' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/GSRI.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'C:/Users/biocbuild/bbs-3.10-bioc/meat/GSRI.Rcheck/00check.log'
for details.

Installation output

GSRI.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GSRI_2.34.0.tar.gz && rm -rf GSRI.buildbin-libdir && mkdir GSRI.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSRI.buildbin-libdir GSRI_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GSRI_2.34.0.zip && rm GSRI_2.34.0.tar.gz GSRI_2.34.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 32855  100 32855    0     0   976k      0 --:--:-- --:--:-- --:--:-- 1106k

install for i386

* installing *source* package 'GSRI' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GSRI'
    finding HTML links ... done
    GSRI-internal                           html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:60: file link 'getGsri' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:61: file link 'getCdf' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:62: file link 'getParms' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:66: file link 'show' in package 'GSRI' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmIOiby/R.INSTALL27f87823316b/GSRI/man/GSRI-internal.Rd:67: file link 'summary' in package 'GSRI' does not exist and so has been treated as a topic
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    GSRI-package                            html  
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    Gsri-class                              html  
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    export                                  html  
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    get-methods                             html  
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    gsri                                    html  
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    plot                                    html  
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    read-functions                          html  
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    sortGsri                                html  
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    test-functions                          html  
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** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GSRI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSRI' as GSRI_2.34.0.zip
* DONE (GSRI)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'GSRI' successfully unpacked and MD5 sums checked

Tests output

Example timings

GSRI.Rcheck/examples_i386/GSRI-Ex.timings

nameusersystemelapsed
GSRI-package1.330.151.48
Gsri-class000
export000
get-methods000
gsri1.090.101.19
plot000
read-functions000
sortGsri000
test-functions000

GSRI.Rcheck/examples_x64/GSRI-Ex.timings

nameusersystemelapsed
GSRI-package1.770.081.85
Gsri-class000
export000
get-methods000
gsri1.030.061.09
plot000
read-functions000
sortGsri000
test-functions000