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BUILD BIN report for ExpressionView on tokay1

This page was generated on 2020-04-15 12:19:13 -0400 (Wed, 15 Apr 2020).

Package 553/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ExpressionView 1.38.0
Gabor Csardi
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/ExpressionView
Branch: RELEASE_3_10
Last Commit: f10cb14
Last Changed Date: 2019-10-29 13:08:14 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ExpressionView
Version: 1.38.0
Command: rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionView.buildbin-libdir ExpressionView_1.38.0.tar.gz
StartedAt: 2020-04-15 08:41:35 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 08:42:50 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 74.9 seconds
RetCode: 0
Status:  OK  
PackageFile: ExpressionView_1.38.0.zip
PackageFileSize: 1.764 MiB

Command output

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### Running command:
###
###   rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionView.buildbin-libdir ExpressionView_1.38.0.tar.gz
###
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install for i386

* installing *source* package 'ExpressionView' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c order.cpp -o order.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c orderclusters.cpp -o orderclusters.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ExpressionView.buildbin-libdir/00LOCK-ExpressionView/00new/ExpressionView/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'ExportEV' with signature 'biclusters="Biclust"': no definition for class "Biclust"
** help
*** installing help indices
  converting help for package 'ExpressionView'
    finding HTML links ... done
    ExportEV                                html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpausBzs/R.INSTALL24985b743a0a/ExpressionView/man/ExportEV.Rd:25: file link 'ISAModules' in package 'eisa' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpausBzs/R.INSTALL24985b743a0a/ExpressionView/man/ExportEV.Rd:28: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpausBzs/R.INSTALL24985b743a0a/ExpressionView/man/ExportEV.Rd:67: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpausBzs/R.INSTALL24985b743a0a/ExpressionView/man/ExportEV.Rd:73: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    ExpressionView-package                  html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpausBzs/R.INSTALL24985b743a0a/ExpressionView/man/ExpressionView-package.Rd:17: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpausBzs/R.INSTALL24985b743a0a/ExpressionView/man/ExpressionView-package.Rd:20: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpausBzs/R.INSTALL24985b743a0a/ExpressionView/man/ExpressionView-package.Rd:44: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    LaunchEV                                html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpausBzs/R.INSTALL24985b743a0a/ExpressionView/man/LaunchEV.Rd:19: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    OrderEV                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpausBzs/R.INSTALL24985b743a0a/ExpressionView/man/OrderEV.Rd:20: file link 'ISAModules' in package 'eisa' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpausBzs/R.INSTALL24985b743a0a/ExpressionView/man/OrderEV.Rd:61: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ExpressionView' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c order.cpp -o order.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c orderclusters.cpp -o orderclusters.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ExpressionView.buildbin-libdir/ExpressionView/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ExpressionView' as ExpressionView_1.38.0.zip
* DONE (ExpressionView)