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INSTALL report for ComplexHeatmap on tokay1

This page was generated on 2020-04-15 12:24:42 -0400 (Wed, 15 Apr 2020).

Package 348/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ComplexHeatmap 2.2.0
Zuguang Gu
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/ComplexHeatmap
Branch: RELEASE_3_10
Last Commit: 8ef3ec8
Last Changed Date: 2019-10-29 13:09:15 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ComplexHeatmap
Version: 2.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ComplexHeatmap_2.2.0.tar.gz && rm -rf ComplexHeatmap.buildbin-libdir && mkdir ComplexHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ComplexHeatmap_2.2.0.zip && rm ComplexHeatmap_2.2.0.tar.gz ComplexHeatmap_2.2.0.zip
StartedAt: 2020-04-14 18:41:42 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:44:22 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 159.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ComplexHeatmap_2.2.0.tar.gz && rm -rf ComplexHeatmap.buildbin-libdir && mkdir ComplexHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ComplexHeatmap_2.2.0.zip && rm ComplexHeatmap_2.2.0.tar.gz ComplexHeatmap_2.2.0.zip
###
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install for i386

* installing *source* package 'ComplexHeatmap' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ComplexHeatmap'
    finding HTML links ... done
    AdditiveUnit-class                      html  
    AdditiveUnit                            html  
    AnnotationFunction-class                html  
    AnnotationFunction                      html  
    ColorMapping-class                      html  
    ColorMapping                            html  
    ComplexHeatmap-package                  html  
    Extract.AnnotationFunction              html  
    Extract.Heatmap                         html  
    Extract.HeatmapAnnotation               html  
    Extract.HeatmapList                     html  
    Extract.SingleAnnotation                html  
    Extract.comb_mat                        html  
    Heatmap-class                           html  
    Heatmap                                 html  
    HeatmapAnnotation-class                 html  
    HeatmapAnnotation                       html  
    HeatmapList-class                       html  
    HeatmapList                             html  
    Legend                                  html  
    Legends-class                           html  
    Legends                                 html  
    SingleAnnotation-class                  html  
    SingleAnnotation                        html  
    UpSet                                   html  
    add.AdditiveUnit                        html  
    add_heatmap-Heatmap-method              html  
    add_heatmap-HeatmapAnnotation-method    html  
    add_heatmap-HeatmapList-method          html  
    add_heatmap-dispatch                    html  
    adjust_dend_by_x                        html  
    adjust_heatmap_list-HeatmapList-method
                                            html  
    anno_barplot                            html  
    anno_block                              html  
    anno_boxplot                            html  
    anno_density                            html  
    anno_empty                              html  
    anno_histogram                          html  
    anno_horizon                            html  
    anno_image                              html  
    anno_joyplot                            html  
    anno_lines                              html  
    anno_link                               html  
    anno_mark                               html  
    anno_oncoprint_barplot                  html  
    anno_points                             html  
    anno_simple                             html  
    anno_summary                            html  
    anno_text                               html  
    anno_zoom                               html  
    annotation_axis_grob                    html  
    annotation_legend_size-HeatmapList-method
                                            html  
    c.ColorMapping                          html  
    c.HeatmapAnnotation                     html  
    cluster_within_group                    html  
    color_mapping_legend-ColorMapping-method
                                            html  
    columnAnnotation                        html  
    column_dend-Heatmap-method              html  
    column_dend-HeatmapList-method          html  
    column_dend-dispatch                    html  
    column_order-Heatmap-method             html  
    column_order-HeatmapList-method         html  
    column_order-dispatch                   html  
    comb_degree                             html  
    comb_name                               html  
    comb_size                               html  
    component_height-Heatmap-method         html  
    component_height-HeatmapList-method     html  
    component_height-dispatch               html  
    component_width-Heatmap-method          html  
    component_width-HeatmapList-method      html  
    component_width-dispatch                html  
    copy_all-AnnotationFunction-method      html  
    copy_all-SingleAnnotation-method        html  
    copy_all-dispatch                       html  
    decorate_annotation                     html  
    decorate_column_dend                    html  
    decorate_column_names                   html  
    decorate_column_title                   html  
    decorate_dend                           html  
    decorate_dimnames                       html  
    decorate_heatmap_body                   html  
    decorate_row_dend                       html  
    decorate_row_names                      html  
    decorate_row_title                      html  
    decorate_title                          html  
    default_axis_param                      html  
    default_get_type                        html  
    dend_heights                            html  
    dend_xy                                 html  
    dendrogramGrob                          html  
    densityHeatmap                          html  
    dim.Heatmap                             html  
    dist2                                   html  
    draw-AnnotationFunction-method          html  
    draw-Heatmap-method                     html  
    draw-HeatmapAnnotation-method           html  
    draw-HeatmapList-method                 html  
    draw-Legends-method                     html  
    draw-SingleAnnotation-method            html  
    draw-dispatch                           html  
    draw_annotation-Heatmap-method          html  
    draw_annotation_legend-HeatmapList-method
                                            html  
    draw_dend-Heatmap-method                html  
    draw_dimnames-Heatmap-method            html  
    draw_heatmap_body-Heatmap-method        html  
    draw_heatmap_legend-HeatmapList-method
                                            html  
    draw_heatmap_list-HeatmapList-method    html  
    draw_title-Heatmap-method               html  
    draw_title-HeatmapList-method           html  
    draw_title-dispatch                     html  
    extract_comb                            html  
    getXY_in_parent_vp                      html  
    get_color_mapping_list-HeatmapAnnotation-method
                                            html  
    get_legend_param_list-HeatmapAnnotation-method
                                            html  
    grid.annotation_axis                    html  
    grid.boxplot                            html  
    grid.dendrogram                         html  
    grid.draw.Legends                       html  
    heatmap_legend_size-HeatmapList-method
                                            html  
    height.AnnotationFunction               html  
    height.Heatmap                          html  
    height.HeatmapAnnotation                html  
    height.HeatmapList                      html  
    height.Legends                          html  
    height.SingleAnnotation                 html  
    heightAssign.AnnotationFunction         html  
    heightAssign.HeatmapAnnotation          html  
    heightAssign.SingleAnnotation           html  
    heightDetails.annotation_axis           html  
    heightDetails.legend                    html  
    heightDetails.legend_body               html  
    heightDetails.packed_legends            html  
    ht_global_opt                           html  
    ht_opt                                  html  
    is_abs_unit                             html  
    length.HeatmapAnnotation                html  
    length.HeatmapList                      html  
    list_components                         html  
    list_to_matrix                          html  
    make_column_cluster-Heatmap-method      html  
    make_comb_mat                           html  
    make_layout-Heatmap-method              html  
    make_layout-HeatmapList-method          html  
    make_layout-dispatch                    html  
    make_row_cluster-Heatmap-method         html  
    map_to_colors-ColorMapping-method       html  
    max_text_height                         html  
    max_text_width                          html  
    merge_dendrogram                        html  
    names.HeatmapAnnotation                 html  
    names.HeatmapList                       html  
    namesAssign.HeatmapAnnotation           html  
    ncol.Heatmap                            html  
    nobs.AnnotationFunction                 html  
    nobs.HeatmapAnnotation                  html  
    nobs.SingleAnnotation                   html  
    normalize_comb_mat                      html  
    nrow.Heatmap                            html  
    oncoPrint                               html  
    order.comb_mat                          html  
    packLegend                              html  
    pct_v_pct                               html  
    pindex                                  html  
    prepare-Heatmap-method                  html  
    print.comb_mat                          html  
    re_size-HeatmapAnnotation-method        html  
    restore_matrix                          html  
    rowAnnotation                           html  
    row_anno_barplot                        html  
    row_anno_boxplot                        html  
    row_anno_density                        html  
    row_anno_histogram                      html  
    row_anno_link                           html  
    row_anno_points                         html  
    row_anno_text                           html  
    row_dend-Heatmap-method                 html  
    row_dend-HeatmapList-method             html  
    row_dend-dispatch                       html  
    row_order-Heatmap-method                html  
    row_order-HeatmapList-method            html  
    row_order-dispatch                      html  
    set_component_height-Heatmap-method     html  
    set_component_width-Heatmap-method      html  
    set_name                                html  
    set_size                                html  
    show-AnnotationFunction-method          html  
    show-ColorMapping-method                html  
    show-Heatmap-method                     html  
    show-HeatmapAnnotation-method           html  
    show-HeatmapList-method                 html  
    show-SingleAnnotation-method            html  
    show-dispatch                           html  
    size.AnnotationFunction                 html  
    size.HeatmapAnnotation                  html  
    size.SingleAnnotation                   html  
    sizeAssign.AnnotationFunction           html  
    sizeAssign.HeatmapAnnotation            html  
    sizeAssign.SingleAnnotation             html  
    smartAlign2                             html  
    str.comb_mat                            html  
    subset_gp                               html  
    subset_matrix_by_row                    html  
    subset_vector                           html  
    summary.Heatmap                         html  
    summary.HeatmapList                     html  
    t.comb_mat                              html  
    test_alter_fun                          html  
    unify_mat_list                          html  
    upset_right_annotation                  html  
    upset_top_annotation                    html  
    width.AnnotationFunction                html  
    width.Heatmap                           html  
    width.HeatmapAnnotation                 html  
    width.HeatmapList                       html  
    width.Legends                           html  
    width.SingleAnnotation                  html  
    widthAssign.AnnotationFunction          html  
    widthAssign.HeatmapAnnotation           html  
    widthAssign.SingleAnnotation            html  
    widthDetails.annotation_axis            html  
    widthDetails.legend                     html  
    widthDetails.legend_body                html  
    widthDetails.packed_legends             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ComplexHeatmap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ComplexHeatmap' as ComplexHeatmap_2.2.0.zip
* DONE (ComplexHeatmap)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'ComplexHeatmap' successfully unpacked and MD5 sums checked