Package: CellScore

Version: 1.6.0

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:CellScore.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings CellScore_1.6.0.tar.gz

StartedAt: 2020-04-15 05:29:05 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 05:34:32 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 327.3 seconds

RetCode: 0

Status:  OK

CheckDir: CellScore.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:CellScore.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings CellScore_1.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/CellScore.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CellScore/DESCRIPTION’ ... OK
* this is package ‘CellScore’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CellScore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                 user system elapsed
CellScoreReport                43.368  0.856  44.862
RugplotCellScore               34.276  0.172  34.659
heatmapOnOffMarkers            29.624  0.276  29.977
ScatterplotCellScoreComponents 28.116  0.192  28.408
extractTransitions             28.072  0.160  28.276
PlotCosineSimHeatmap           27.944  0.164  28.210
CellScore                      21.584  0.232  21.974
BoxplotCellScore               20.144  0.372  20.564
PcaStandards                   20.068  0.188  20.381
CosineSimScore                 19.052  0.332  19.529
OnOff                          10.696  0.296  11.079
BarplotOnOff                    8.528  0.640   9.490
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL CellScore
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘CellScore’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellScore)

name	user	system	elapsed
BarplotOnOff	8.528	0.640	9.490
BoxplotCellScore	20.144	0.372	20.564
CellScore	21.584	0.232	21.974
CellScoreReport	43.368	0.856	44.862
CosineSimScore	19.052	0.332	19.529
OnOff	10.696	0.296	11.079
PcaStandards	20.068	0.188	20.381
PlotCosineSimHeatmap	27.944	0.164	28.210
RugplotCellScore	34.276	0.172	34.659
ScatterplotCellScoreComponents	28.116	0.192	28.408
extractTransitions	28.072	0.160	28.276
heatmapOnOffMarkers	29.624	0.276	29.977
rugplotDonorTargetTest	0	0	0
scatterplotDonorTargetTest	0.000	0.000	0.001