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INSTALL report for BufferedMatrixMethods on tokay1

This page was generated on 2020-04-15 12:17:55 -0400 (Wed, 15 Apr 2020).

Package 206/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.50.0
Ben Bolstad
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/BufferedMatrixMethods
Branch: RELEASE_3_10
Last Commit: c88e3a1
Last Changed Date: 2019-10-29 13:07:46 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BufferedMatrixMethods
Version: 1.50.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BufferedMatrixMethods_1.50.0.tar.gz && rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BufferedMatrixMethods_1.50.0.zip && rm BufferedMatrixMethods_1.50.0.tar.gz BufferedMatrixMethods_1.50.0.zip
StartedAt: 2020-04-14 18:33:31 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:33:48 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 17.1 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BufferedMatrixMethods_1.50.0.tar.gz && rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BufferedMatrixMethods_1.50.0.zip && rm BufferedMatrixMethods_1.50.0.tar.gz BufferedMatrixMethods_1.50.0.zip
###
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install for i386

* installing *source* package 'BufferedMatrixMethods' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BufferedMatrix/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init_package.c -o init_package.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BufferedMatrix/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable]
   int current_mode;
       ^
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable]
   int current_mode;
       ^
preprocess_bm.c: In function 'do_RMA_buffmat':
preprocess_bm.c:924:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
   int first_ind;
       ^
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable]
   int current_mode;
       ^
preprocess_bm.c: At top level:
preprocess_bm.c:453:12: warning: 'min' defined but not used [-Wunused-function]
 static int min(int x1,int x2){
            ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BufferedMatrixMethods.buildbin-libdir/00LOCK-BufferedMatrixMethods/00new/BufferedMatrixMethods/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BufferedMatrixMethods'
    finding HTML links ... done
    BM_affyDataInput                        html  
    BM_justRMA                              html  
    BM_readcelfiles                         html  
    rmapreprocess.bufferedmatrix            html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BufferedMatrixMethods' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BufferedMatrix/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init_package.c -o init_package.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BufferedMatrix/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable]
   int i,j;
       ^
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable]
   int current_mode;
       ^
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable]
   int current_mode;
       ^
preprocess_bm.c: In function 'do_RMA_buffmat':
preprocess_bm.c:924:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
   int first_ind;
       ^
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable]
   int current_mode;
       ^
preprocess_bm.c: At top level:
preprocess_bm.c:453:12: warning: 'min' defined but not used [-Wunused-function]
 static int min(int x1,int x2){
            ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BufferedMatrixMethods' as BufferedMatrixMethods_1.50.0.zip
* DONE (BufferedMatrixMethods)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'BufferedMatrixMethods' successfully unpacked and MD5 sums checked