Craig McLean
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/Autotuner |
| Branch: RELEASE_3_10 |
| Last Commit: 04527bb |
| Last Changed Date: 2020-02-26 15:21:51 -0400 (Wed, 26 Feb 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:49:45 -0400 (Wed, 15 Apr 2020).
| Package 99/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Autotuner 1.0.1 Craig McLean
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: Autotuner |
| Version: 1.0.1 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Autotuner.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Autotuner_1.0.1.tar.gz |
| StartedAt: 2020-04-15 00:30:32 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 00:34:46 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 254.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Autotuner.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Autotuner.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Autotuner_1.0.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/Autotuner.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Autotuner/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Autotuner’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Autotuner’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
createAutotuner 8.241 0.549 8.855
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Autotuner.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Autotuner ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘Autotuner’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Autotuner)
Autotuner.Rcheck/tests/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
>
>
> test_check("Autotuner")
Loading required package: Autotuner
____________________________________________________________
/ __ / / / /__ __/ _ /__ __/ / / /\ / / ____/ __ /
/ / / / / / / / / / / / / / / / / / / \ / / /___/ /_/ /
/ /_/ / / / / / / / / / / / / / / / / /\ \ / / ____/ _ \
/ __ / /_/ / / / / /_/ / / / / /_/ / / \ / /__/ / / /
/_/ /_/_____/ /_/ /_____/ /_/ /_____/_/ \ /_____/__/ /__/ v.1.0.1
https://github.com/crmclean/autotuner
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 69 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
88.872 2.582 92.732
Autotuner.Rcheck/Autotuner-Ex.timings
| name | user | system | elapsed | |
| ThresholdingAlgo | 0.172 | 0.006 | 0.180 | |
| createAutotuner | 8.241 | 0.549 | 8.855 | |
| getAutoFactorCol | 0.004 | 0.000 | 0.004 | |
| getAutoFile_col | 0.006 | 0.000 | 0.006 | |
| getAutoFile_paths | 0.006 | 0.000 | 0.006 | |
| getAutoIntensity | 0.007 | 0.001 | 0.007 | |
| getAutoMetadata | 0.007 | 0.000 | 0.007 | |
| getAutoPeak_difference | 0.007 | 0.000 | 0.007 | |
| getAutoPeak_table | 0.007 | 0.001 | 0.007 | |
| getAutoPeaks | 0.005 | 0.000 | 0.005 | |
| getAutoTime | 0.004 | 0.001 | 0.004 | |
| isolatePeaks | 0.758 | 0.068 | 0.838 | |
| plot_peaks | 0.032 | 0.001 | 0.033 | |
| plot_signals | 0.204 | 0.009 | 0.215 | |
| returnParams | 0.009 | 0.001 | 0.009 | |
| setAutoFactorCol | 0.006 | 0.000 | 0.006 | |
| setAutoFile_col | 0.004 | 0.000 | 0.004 | |
| setAutoFile_paths | 0.006 | 0.001 | 0.007 | |
| setAutoIntensity | 0.004 | 0.000 | 0.004 | |
| setAutoMetadata | 0.005 | 0.000 | 0.005 | |
| setAutoPeak_difference | 0.006 | 0.000 | 0.007 | |
| setAutoPeak_table | 0.007 | 0.001 | 0.007 | |
| setAutoPeaks | 0.007 | 0.000 | 0.008 | |
| setAutoTime | 0.007 | 0.000 | 0.008 | |