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BioC experimental data: CHECK report for chipenrich.data on moscato2

This page was generated on 2015-10-07 16:21:23 -0700 (Wed, 07 Oct 2015).

Package 40/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chipenrich.data 1.4.0
Ryan P. Welch , Chee Lee , Raymond G. Cavalcante
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/chipenrich.data
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: chipenrich.data
Version: 1.4.0
Command: rm -rf chipenrich.data.buildbin-libdir chipenrich.data.Rcheck && mkdir chipenrich.data.buildbin-libdir chipenrich.data.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=chipenrich.data.buildbin-libdir chipenrich.data_1.4.0.tar.gz >chipenrich.data.Rcheck\00install.out 2>&1 && cp chipenrich.data.Rcheck\00install.out chipenrich.data-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=chipenrich.data.buildbin-libdir --install="check:chipenrich.data-install.out" --force-multiarch --no-vignettes --timings chipenrich.data_1.4.0.tar.gz
StartedAt: 2015-10-07 10:02:44 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 10:05:39 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 175.1 seconds
RetCode: 0
Status:  OK  
CheckDir: chipenrich.data.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf chipenrich.data.buildbin-libdir chipenrich.data.Rcheck && mkdir chipenrich.data.buildbin-libdir chipenrich.data.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=chipenrich.data.buildbin-libdir chipenrich.data_1.4.0.tar.gz >chipenrich.data.Rcheck\00install.out 2>&1 && cp chipenrich.data.Rcheck\00install.out chipenrich.data-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=chipenrich.data.buildbin-libdir --install="check:chipenrich.data-install.out" --force-multiarch --no-vignettes --timings chipenrich.data_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-data-experiment/meat/chipenrich.data.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'chipenrich.data/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'chipenrich.data' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'chipenrich.data' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 62.7Mb
  sub-directories of 1Mb or more:
    data  62.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [5s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.1-data-experiment/meat/chipenrich.data.Rcheck/00check.log'
for details.


chipenrich.data.Rcheck/00install.out:


install for i386

* installing *source* package 'chipenrich.data' ...
** R
** data
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'

install for x64

* installing *source* package 'chipenrich.data' ...
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* MD5 sums
packaged installation of 'chipenrich.data' as chipenrich.data_1.4.0.zip
* DONE (chipenrich.data)

chipenrich.data.Rcheck/examples_i386/chipenrich.data-Ex.timings:

nameusersystemelapsed
GeneSet-class0.190.030.22
LocusDefinition-class0.170.000.17
chipenrich.data-package0.280.000.28
example_datasets000
peaks_E2F40.030.000.03
peaks_H3K4me3_GM12878000

chipenrich.data.Rcheck/examples_x64/chipenrich.data-Ex.timings:

nameusersystemelapsed
GeneSet-class0.220.030.31
LocusDefinition-class0.190.000.19
chipenrich.data-package0.260.000.26
example_datasets000
peaks_E2F40.010.000.01
peaks_H3K4me3_GM12878000