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BioC experimental data: CHECK report for WES.1KG.WUGSC on moscato2

This page was generated on 2015-10-07 16:21:29 -0700 (Wed, 07 Oct 2015).

Package 233/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
WES.1KG.WUGSC 1.0.0
Yuchao Jiang
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/WES.1KG.WUGSC
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: WES.1KG.WUGSC
Version: 1.0.0
Command: rm -rf WES.1KG.WUGSC.buildbin-libdir WES.1KG.WUGSC.Rcheck && mkdir WES.1KG.WUGSC.buildbin-libdir WES.1KG.WUGSC.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=WES.1KG.WUGSC.buildbin-libdir WES.1KG.WUGSC_1.0.0.tar.gz >WES.1KG.WUGSC.Rcheck\00install.out 2>&1 && cp WES.1KG.WUGSC.Rcheck\00install.out WES.1KG.WUGSC-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=WES.1KG.WUGSC.buildbin-libdir --install="check:WES.1KG.WUGSC-install.out" --force-multiarch --no-vignettes --timings WES.1KG.WUGSC_1.0.0.tar.gz
StartedAt: 2015-10-07 12:16:47 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 12:20:55 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 247.6 seconds
RetCode: 0
Status:  OK  
CheckDir: WES.1KG.WUGSC.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf WES.1KG.WUGSC.buildbin-libdir WES.1KG.WUGSC.Rcheck && mkdir WES.1KG.WUGSC.buildbin-libdir WES.1KG.WUGSC.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=WES.1KG.WUGSC.buildbin-libdir WES.1KG.WUGSC_1.0.0.tar.gz >WES.1KG.WUGSC.Rcheck\00install.out 2>&1 && cp WES.1KG.WUGSC.Rcheck\00install.out WES.1KG.WUGSC-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=WES.1KG.WUGSC.buildbin-libdir --install="check:WES.1KG.WUGSC-install.out" --force-multiarch --no-vignettes --timings WES.1KG.WUGSC_1.0.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-3.1-data-experiment/meat/WES.1KG.WUGSC.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'WES.1KG.WUGSC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'WES.1KG.WUGSC' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'WES.1KG.WUGSC' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 374.1Mb
  sub-directories of 1Mb or more:
    extdata  373.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'E:/biocbld/bbs-3.1-data-experiment/meat/WES.1KG.WUGSC.Rcheck/00check.log'
for details.


WES.1KG.WUGSC.Rcheck/00install.out:


install for i386

* installing *source* package 'WES.1KG.WUGSC' ...
** inst
** help
No man pages found in package  'WES.1KG.WUGSC' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'WES.1KG.WUGSC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'WES.1KG.WUGSC' as WES.1KG.WUGSC_1.0.0.zip
* DONE (WES.1KG.WUGSC)