BioC experimental data: CHECK report for PWMEnrich.Hsapiens.background on zin2

Package: PWMEnrich.Hsapiens.background

Version: 4.2.0

Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings PWMEnrich.Hsapiens.background_4.2.0.tar.gz

StartedAt: 2015-10-07 10:28:18 -0700 (Wed, 07 Oct 2015)

EndedAt: 2015-10-07 10:32:17 -0700 (Wed, 07 Oct 2015)

EllapsedTime: 239.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: PWMEnrich.Hsapiens.background.Rcheck

Warnings: 1

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### Running command:
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###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings PWMEnrich.Hsapiens.background_4.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.1-data-experiment/meat/PWMEnrich.Hsapiens.background.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PWMEnrich.Hsapiens.background/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PWMEnrich.Hsapiens.background’ version ‘4.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PWMEnrich.Hsapiens.background’ can be installed ... [3s/5s] OK
* checking installed package size ... NOTE
  installed size is 15.7Mb
  sub-directories of 1Mb or more:
    data  15.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                                             old_size new_size compress
  MotifDb.Hsap.PFM.RData                        137Kb     94Kb    bzip2
  MotifDb.Hsap.RData                            537Kb    425Kb       xz
  PWMCutoff4.hg19.MotifDb.Hsap.RData            524Kb    407Kb       xz
  PWMCutoff5.hg19.MotifDb.Hsap.RData            524Kb    408Kb       xz
  PWMLogn.hg19.MotifDb.Hsap.RData               718Kb    565Kb       xz
  PWMPvalueCutoff1e2.hg19.MotifDb.Hsap.RData    540Kb    416Kb       xz
  PWMPvalueCutoff1e3.hg19.MotifDb.Hsap.RData    540Kb    415Kb       xz
  PWMPvalueCutoff1e4.hg19.MotifDb.Hsap.RData    540Kb    415Kb       xz
  hg19.upstream2000.RData                      11.6Mb    9.1Mb       xz
* checking examples ... [6s/10s] OK
Examples with CPU or elapsed time > 5s
                                       user system elapsed
PWMEnrich.Hsapiens.background-package 3.081  0.007   5.635
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.1-data-experiment/meat/PWMEnrich.Hsapiens.background.Rcheck/00check.log’
for details.

* installing *source* package ‘PWMEnrich.Hsapiens.background’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (PWMEnrich.Hsapiens.background)

name	user	system	elapsed
PWMEnrich.Hsapiens.background-package	3.081	0.007	5.635