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BioC experimental data: CHECK report for KEGGdzPathwaysGEO on petty

This page was generated on 2015-10-07 16:21:45 -0700 (Wed, 07 Oct 2015).

Package 136/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGdzPathwaysGEO 1.6.0
Gaurav Bhatti
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/KEGGdzPathwaysGEO
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: KEGGdzPathwaysGEO
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.6.0.tar.gz
StartedAt: 2015-10-07 09:32:48 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 09:41:05 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 496.6 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGdzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.6.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... [3s/8s] OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [7s/7s] OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.


KEGGdzPathwaysGEO.Rcheck/00install.out:

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KEGGdzPathwaysGEO)

KEGGdzPathwaysGEO.Rcheck/KEGGdzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE12970.1630.0070.170
GSE147620.2990.0180.317
GSE154710.4790.0380.517
GSE165150.2650.0250.291
GSE188420.5390.0530.592
GSE191880.8300.0960.926
GSE197280.1730.0080.180
GSE201530.1580.0060.163
GSE202910.0940.0080.102
GSE213540.1620.0070.169
GSE34670.2010.0230.224
GSE35850.0550.0020.056
GSE36780.1390.0090.147
GSE41070.1760.0080.184
GSE5281_EC0.1720.0150.186
GSE5281_HIP0.1800.0150.195
GSE5281_VCX0.2120.0180.229
GSE6956AA0.0610.0340.094
GSE6956C0.0630.0040.067
GSE7810.0650.0050.069
GSE86710.3610.0360.397
GSE87620.1780.0060.184
GSE93480.4460.0570.502
GSE94760.1460.0080.154
KEGGdzPathwaysGEO-package0.4530.0400.493