Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.1: BUILD report for phenoDist on morelia

This page was generated on 2015-10-09 09:39:32 -0700 (Fri, 09 Oct 2015).

Package 714/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phenoDist 1.16.0
Xian Zhang
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/phenoDist
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: phenoDist
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data phenoDist
StartedAt: 2015-10-08 19:56:40 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 19:57:05 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 25.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data phenoDist
###
##############################################################################
##############################################################################


* checking for file ‘phenoDist/DESCRIPTION’ ... OK
* preparing ‘phenoDist’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: EBImage

Attaching package: ‘EBImage’

The following object is masked _by_ ‘.GlobalEnv’:

    display

Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:stats’:

    xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
    eval, evalq, get, intersect, is.unsorted, lapply, mapply, match,
    mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rep.int, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unlist, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: ‘Biobase’

The following object is masked from ‘package:EBImage’:

    channel

Loading required package: genefilter
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’

Attaching package: ‘genefilter’

The following object is masked from ‘package:base’:

    anyNA

Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Loading required package: grid
trying URL 'http://www.ebi.ac.uk/˜gpau/imageHTS/screens/kimorph/conf/imageconf.txt'
Warning in fileHTS(x, type = type, ..., access = access) :
  cannot download the file pointed by "http://www.ebi.ac.uk/˜gpau/imageHTS/screens/kimorph/conf/imageconf.txt" to the location "/private/tmp/RtmpgT3dAj/kimorph/conf/imageconf.txt"

Error: processing vignette 'phenoDist.Rnw' failed with diagnostics:
 chunk 3 (label = imageHTSSetup) 
Error in readHTS(x, type = "file", filename = filename, access = access,  : 
  cannot find filename=/private/tmp/RtmpgT3dAj/kimorph/conf/imageconf.txt
Execution halted