Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.1: CHECK report for maSigPro on moscato2

This page was generated on 2015-10-09 09:27:33 -0700 (Fri, 09 Oct 2015).

Package 553/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.40.0
Maria Jose Nueda
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/maSigPro
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: maSigPro
Version: 1.40.0
Command: rm -rf maSigPro.buildbin-libdir maSigPro.Rcheck && mkdir maSigPro.buildbin-libdir maSigPro.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=maSigPro.buildbin-libdir maSigPro_1.40.0.tar.gz >maSigPro.Rcheck\00install.out 2>&1 && cp maSigPro.Rcheck\00install.out maSigPro-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=maSigPro.buildbin-libdir --install="check:maSigPro-install.out" --force-multiarch --no-vignettes --timings maSigPro_1.40.0.tar.gz
StartedAt: 2015-10-09 03:24:53 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 03:26:42 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 109.3 seconds
RetCode: 0
Status:  OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf maSigPro.buildbin-libdir maSigPro.Rcheck && mkdir maSigPro.buildbin-libdir maSigPro.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=maSigPro.buildbin-libdir maSigPro_1.40.0.tar.gz >maSigPro.Rcheck\00install.out 2>&1 && cp maSigPro.Rcheck\00install.out maSigPro-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=maSigPro.buildbin-libdir --install="check:maSigPro-install.out" --force-multiarch --no-vignettes --timings maSigPro_1.40.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/maSigPro.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maSigPro/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'maSigPro' version '1.40.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'maSigPro' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase' 'stats' 'MASS'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'utils'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
see.genes: warning in mfuzz(signif, c = k, m = m): partial argument
  match of 'c' to 'centers'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [20s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
T.fit    6.69   0.03    6.72
maSigPro 4.83   0.02    5.23
** running examples for arch 'x64' ... [26s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
T.fit    8.68   0.01    8.68
maSigPro 6.07   0.01    6.16
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'E:/biocbld/bbs-3.1-bioc/meat/maSigPro.Rcheck/00check.log'
for details.


maSigPro.Rcheck/00install.out:


install for i386

* installing *source* package 'maSigPro' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'maSigPro' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'maSigPro' as maSigPro_1.40.0.zip
* DONE (maSigPro)

maSigPro.Rcheck/examples_i386/maSigPro-Ex.timings:

nameusersystemelapsed
NBdata0.050.000.05
NBdesign000
PlotGroups0.020.000.01
PlotProfiles0.020.000.02
T.fit6.690.036.72
average.rows000
data.abiotic000
edesign.OD000
edesign.abiotic000
edesignCT000
edesignDR0.000.020.01
get.siggenes3.190.013.20
i.rank000
maSigPro4.830.025.23
maSigProUsersGuide000
make.design.matrix000
p.vector1.930.001.94
position000
reg.coeffs000
see.genes0.750.190.93
stepback0.030.000.03
stepfor0.130.000.13
suma2Venn0.000.010.01
two.ways.stepback0.090.000.10
two.ways.stepfor0.130.000.12

maSigPro.Rcheck/examples_x64/maSigPro-Ex.timings:

nameusersystemelapsed
NBdata0.010.010.03
NBdesign0.000.020.01
PlotGroups0.010.000.02
PlotProfiles0.000.020.02
T.fit8.680.018.68
average.rows0.010.000.02
data.abiotic000
edesign.OD000
edesign.abiotic0.010.000.01
edesignCT000
edesignDR0.020.000.02
get.siggenes4.660.024.68
i.rank000
maSigPro6.070.016.16
maSigProUsersGuide000
make.design.matrix0.000.020.01
p.vector2.640.012.66
position000
reg.coeffs000
see.genes1.080.141.21
stepback0.030.000.03
stepfor0.140.000.14
suma2Venn000
two.ways.stepback0.140.000.14
two.ways.stepfor0.240.000.23