BioC 3.1: CHECK report for imageHTS on moscato2

Package: imageHTS

Version: 1.18.2

Command: E:\biocbld\bbs-3.1-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.18.2.tar.gz

StartedAt: 2015-10-09 03:00:26 -0700 (Fri, 09 Oct 2015)

EndedAt: 2015-10-09 03:04:16 -0700 (Fri, 09 Oct 2015)

EllapsedTime: 229.7 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

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### Running command:
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###   E:\biocbld\bbs-3.1-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.18.2.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/imageHTS.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.18.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'imageHTS' can be installed ... [15s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [82s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
extractFeatures 27.97   1.24   29.22
countObjects    11.47   0.49   12.04
segmentWells     7.67   0.39    8.07
segmentYeastBF   4.64   0.51    5.15
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.1-bioc/meat/imageHTS.Rcheck/00check.log'
for details.

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	11.47	0.49	12.04
extractFeatures	27.97	1.24	29.22
fileHTS	2.64	0.03	3.53
getImageConf	1.31	0.00	1.31
getUnames	3.41	0.01	3.43
getWellFeatures	4.03	0.00	4.02
highlightSegmentation	0	0	0
installCellPicker	2.01	0.02	2.05
makeCellHTS	0	0	0
parseDCF	0	0	0
parseImageConf	1.26	0.00	1.26
popCellPicker	1.25	0.00	1.25
prw2uname	0	0	0
readLearnTS	0	0	0
segmentATH	0	0	0
segmentWells	7.67	0.39	8.07
segmentYeastBF	4.64	0.51	5.15
summarizeWells	0	0	0
zprime	3.50	0.02	3.51