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BioC 3.1: CHECK report for GSAR on moscato2

This page was generated on 2015-10-09 09:31:17 -0700 (Fri, 09 Oct 2015).

Package 442/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSAR 1.2.2
Yasir Rahmatallah , Galina Glazko
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/GSAR
Last Changed Rev: 106034 / Revision: 109384
Last Changed Date: 2015-07-13 11:31:07 -0700 (Mon, 13 Jul 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GSAR
Version: 1.2.2
Command: rm -rf GSAR.buildbin-libdir GSAR.Rcheck && mkdir GSAR.buildbin-libdir GSAR.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSAR.buildbin-libdir GSAR_1.2.2.tar.gz >GSAR.Rcheck\00install.out 2>&1 && cp GSAR.Rcheck\00install.out GSAR-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=GSAR.buildbin-libdir --install="check:GSAR-install.out" --force-multiarch --no-vignettes --timings GSAR_1.2.2.tar.gz
StartedAt: 2015-10-09 02:39:24 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 02:40:32 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 68.5 seconds
RetCode: 0
Status:  OK  
CheckDir: GSAR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GSAR.buildbin-libdir GSAR.Rcheck && mkdir GSAR.buildbin-libdir GSAR.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSAR.buildbin-libdir GSAR_1.2.2.tar.gz >GSAR.Rcheck\00install.out 2>&1 && cp GSAR.Rcheck\00install.out GSAR-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=GSAR.buildbin-libdir --install="check:GSAR-install.out" --force-multiarch --no-vignettes --timings GSAR_1.2.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/GSAR.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSAR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GSAR' version '1.2.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSAR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [16s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
WWtest 10.71      0   10.72
** running examples for arch 'x64' ... [20s] OK
Examples with CPU or elapsed time > 5s
       user system elapsed
WWtest 13.6      0   13.69
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

GSAR.Rcheck/00install.out:


install for i386

* installing *source* package 'GSAR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GSAR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSAR' as GSAR_1.2.2.zip
* DONE (GSAR)

GSAR.Rcheck/examples_i386/GSAR-Ex.timings:

nameusersystemelapsed
GSNCAtest2.500.012.51
HDP.ranking0.30.00.3
KStest1.120.021.14
RKStest0.520.000.51
WWtest10.71 0.0010.72
findMST20.040.000.03
p53DataSet0.070.000.08
plotMST2.pathway0.100.000.09

GSAR.Rcheck/examples_x64/GSAR-Ex.timings:

nameusersystemelapsed
GSNCAtest2.840.002.84
HDP.ranking0.410.000.47
KStest1.360.001.36
RKStest0.620.000.62
WWtest13.60 0.0013.69
findMST20.040.000.03
p53DataSet0.070.010.10
plotMST2.pathway0.130.000.12