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BioC 3.1: INSTALL report for DNAcopy on moscato2

This page was generated on 2015-10-09 09:27:16 -0700 (Fri, 09 Oct 2015).

Package 269/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DNAcopy 1.42.0
Venkatraman E. Seshan
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/DNAcopy
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DNAcopy
Version: 1.42.0
Command: C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.1/bioc/src/contrib/DNAcopy_1.42.0.tar.gz && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch DNAcopy_1.42.0.tar.gz && rm DNAcopy_1.42.0.tar.gz
StartedAt: 2015-10-08 18:18:17 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 18:18:57 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 39.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.1/bioc/src/contrib/DNAcopy_1.42.0.tar.gz && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch DNAcopy_1.42.0.tar.gz && rm DNAcopy_1.42.0.tar.gz
###
##############################################################################
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install for i386

* installing to library 'E:/biocbld/bbs-3.1-bioc/R/library'
* installing *source* package 'DNAcopy' ...
** libs
gfortran -m32     -O3  -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
gfortran -m32     -O3  -mtune=core2 -c cbststats.f -o cbststats.o
gfortran -m32     -O3  -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -m32     -O3  -mtune=core2 -c changepoints.f -o changepoints.o
gfortran -m32     -O3  -mtune=core2 -c esegment.f -o esegment.o
gcc -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
gcc -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
gcc -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
gfortran -m32     -O3  -mtune=core2 -c getbdry.f -o getbdry.o
gfortran -m32     -O3  -mtune=core2 -c prune.f -o prune.o
gcc -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
gfortran -m32     -O3  -mtune=core2 -c segmentp.f -o segmentp.o
gfortran -m32     -O3  -mtune=core2 -c smoothCNA.f -o smoothCNA.o
gfortran -m32     -O3  -mtune=core2 -c tailprobs.f -o tailprobs.o
gcc -m32 -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -lgfortran -LE:/biocbld/BBS-3˜1.1-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.1-bioc/R/library/DNAcopy/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'E:/biocbld/bbs-3.1-bioc/R/library'
* installing *source* package 'DNAcopy' ...
** libs
gfortran -m64     -O2  -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
gfortran -m64     -O2  -mtune=core2 -c cbststats.f -o cbststats.o
gfortran -m64     -O2  -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -m64     -O2  -mtune=core2 -c changepoints.f -o changepoints.o
gfortran -m64     -O2  -mtune=core2 -c esegment.f -o esegment.o
gcc -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
gcc -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
gcc -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
gfortran -m64     -O2  -mtune=core2 -c getbdry.f -o getbdry.o
gfortran -m64     -O2  -mtune=core2 -c prune.f -o prune.o
gcc -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
gfortran -m64     -O2  -mtune=core2 -c segmentp.f -o segmentp.o
gfortran -m64     -O2  -mtune=core2 -c smoothCNA.f -o smoothCNA.o
gfortran -m64     -O2  -mtune=core2 -c tailprobs.f -o tailprobs.o
gcc -m64 -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -lgfortran -LE:/biocbld/BBS-3˜1.1-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.1-bioc/R/library/DNAcopy/libs/x64
** testing if installed package can be loaded
* DONE (DNAcopy)