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BioC 3.1: CHECK report for CORREP on moscato2

This page was generated on 2015-10-09 09:27:55 -0700 (Fri, 09 Oct 2015).

Package 219/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CORREP 1.34.0
Dongxiao Zhu
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/CORREP
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CORREP
Version: 1.34.0
Command: rm -rf CORREP.buildbin-libdir CORREP.Rcheck && mkdir CORREP.buildbin-libdir CORREP.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CORREP.buildbin-libdir CORREP_1.34.0.tar.gz >CORREP.Rcheck\00install.out 2>&1 && cp CORREP.Rcheck\00install.out CORREP-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=CORREP.buildbin-libdir --install="check:CORREP-install.out" --force-multiarch --no-vignettes --timings CORREP_1.34.0.tar.gz
StartedAt: 2015-10-09 00:49:08 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 00:50:09 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 61.2 seconds
RetCode: 0
Status:  OK  
CheckDir: CORREP.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CORREP.buildbin-libdir CORREP.Rcheck && mkdir CORREP.buildbin-libdir CORREP.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CORREP.buildbin-libdir CORREP_1.34.0.tar.gz >CORREP.Rcheck\00install.out 2>&1 && cp CORREP.Rcheck\00install.out CORREP-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=CORREP.buildbin-libdir --install="check:CORREP-install.out" --force-multiarch --no-vignettes --timings CORREP_1.34.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/CORREP.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CORREP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CORREP' version '1.34.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CORREP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: CORREP-package.Rd:37-38: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [16s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
permutest 14.33      0   14.33
** running examples for arch 'x64' ... [19s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
permutest 17.11   0.02   17.13
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'E:/biocbld/bbs-3.1-bioc/meat/CORREP.Rcheck/00check.log'
for details.


CORREP.Rcheck/00install.out:


install for i386

* installing *source* package 'CORREP' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'CORREP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CORREP' as CORREP_1.34.0.zip
* DONE (CORREP)

CORREP.Rcheck/examples_i386/CORREP-Ex.timings:

nameusersystemelapsed
cor.LRtest0.050.000.05
cor.LRtest.std0.020.010.03
cor.balance0.110.000.11
cor.bootci1.070.001.07
cor.unbalance0.000.000.33
gal_all0.020.000.02
permutest14.33 0.0014.33
true.member000

CORREP.Rcheck/examples_x64/CORREP-Ex.timings:

nameusersystemelapsed
cor.LRtest0.020.020.03
cor.LRtest.std0.020.000.01
cor.balance0.100.000.11
cor.bootci1.490.001.48
cor.unbalance000
gal_all0.000.010.02
permutest17.11 0.0217.13
true.member000