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BioC 3.1: CHECK report for ASSET on moscato2

This page was generated on 2015-10-09 09:30:36 -0700 (Fri, 09 Oct 2015).

Package 61/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ASSET 1.6.1
William Wheeler
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/ASSET
Last Changed Rev: 103193 / Revision: 109384
Last Changed Date: 2015-04-28 06:19:03 -0700 (Tue, 28 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ASSET
Version: 1.6.1
Command: rm -rf ASSET.buildbin-libdir ASSET.Rcheck && mkdir ASSET.buildbin-libdir ASSET.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ASSET.buildbin-libdir ASSET_1.6.1.tar.gz >ASSET.Rcheck\00install.out 2>&1 && cp ASSET.Rcheck\00install.out ASSET-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=ASSET.buildbin-libdir --install="check:ASSET-install.out" --force-multiarch --no-vignettes --timings ASSET_1.6.1.tar.gz
StartedAt: 2015-10-08 23:26:06 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 23:28:15 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 129.3 seconds
RetCode: 0
Status:  OK  
CheckDir: ASSET.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ASSET.buildbin-libdir ASSET.Rcheck && mkdir ASSET.buildbin-libdir ASSET.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ASSET.buildbin-libdir ASSET_1.6.1.tar.gz >ASSET.Rcheck\00install.out 2>&1 && cp ASSET.Rcheck\00install.out ASSET-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=ASSET.buildbin-libdir --install="check:ASSET-install.out" --force-multiarch --no-vignettes --timings ASSET_1.6.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/ASSET.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASSET/DESCRIPTION' ... OK
* this is package 'ASSET' version '1.6.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASSET' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
License components with restrictions not permitted:
  GPL-2 + file LICENSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'rmeta'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
h.forest: no visible global function definition for 'meta.colors'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [12s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
h.types 8.14      0    8.15
** running examples for arch 'x64' ... [13s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
h.types 8.17      0    8.18
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [10s]
 [10s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [13s]
 [14s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'E:/biocbld/bbs-3.1-bioc/meat/ASSET.Rcheck/00check.log'
for details.


ASSET.Rcheck/00install.out:


install for i386

* installing *source* package 'ASSET' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ASSET' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASSET' as ASSET_1.6.1.zip
* DONE (ASSET)

ASSET.Rcheck/examples_i386/ASSET-Ex.timings:

nameusersystemelapsed
ex_trait0.030.000.03
ex_types0.010.000.01
h.forestPlot0.800.020.82
h.summary0.480.000.48
h.traits0.750.000.75
h.types8.140.008.15
p.dlm0.030.000.03
p.tube0.050.000.04
z.max0.010.000.02

ASSET.Rcheck/examples_x64/ASSET-Ex.timings:

nameusersystemelapsed
ex_trait0.030.000.04
ex_types0.020.000.01
h.forestPlot0.920.000.92
h.summary0.870.000.88
h.traits0.720.000.71
h.types8.170.008.18
p.dlm0.040.000.03
p.tube0.010.000.01
z.max0.010.000.02