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BioC experimental data: CHECK report for geneLenDataBase on zin1

This page was generated on 2015-04-08 17:40:38 -0700 (Wed, 08 Apr 2015).

Package 90/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.1.1
Matthew Young , Nadia Davidson
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3075 / Revision: 3266
Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: geneLenDataBase
Version: 1.1.1
Command: /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.1.1.tar.gz
StartedAt: 2015-04-08 08:23:30 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 08:30:07 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 396.4 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.1.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.0-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.1.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... [22s/24s] OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [76s/81s] OK
* checking PDF version of manual ... OK
* DONE

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-3.0-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.

geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0920.0080.102
anoCar1.genscan.LENGTH0.0560.0160.073
anoCar1.xenoRefGene.LENGTH1.4520.0001.461
anoGam1.ensGene.LENGTH0.3800.0120.393
anoGam1.geneid.LENGTH0.0520.0160.066
anoGam1.genscan.LENGTH0.0480.0120.060
apiMel1.genscan.LENGTH0.0400.0120.052
apiMel2.ensGene.LENGTH0.1160.0040.121
apiMel2.geneid.LENGTH0.0480.0200.070
apiMel2.genscan.LENGTH0.0360.0120.049
aplCal1.xenoRefGene.LENGTH0.5280.0000.528
bosTau2.geneSymbol.LENGTH0.0440.0200.065
bosTau2.geneid.LENGTH0.6360.0000.647
bosTau2.genscan.LENGTH0.0960.0080.102
bosTau2.refGene.LENGTH0.0760.0040.079
bosTau2.sgpGene.LENGTH0.1160.0000.113
bosTau3.ensGene.LENGTH0.1760.0160.190
bosTau3.geneSymbol.LENGTH0.2960.0160.339
bosTau3.geneid.LENGTH0.1200.0040.127
bosTau3.genscan.LENGTH0.0720.0120.086
bosTau3.refGene.LENGTH0.0480.0040.052
bosTau3.sgpGene.LENGTH0.1040.0120.117
bosTau4.ensGene.LENGTH0.1400.0120.151
bosTau4.geneSymbol.LENGTH0.0440.0080.051
bosTau4.genscan.LENGTH0.1200.0040.123
bosTau4.nscanGene.LENGTH0.0360.0120.050
bosTau4.refGene.LENGTH0.0400.0120.054
braFlo1.xenoRefGene.LENGTH0.7600.0040.775
caeJap1.xenoRefGene.LENGTH0.4040.0000.453
caePb1.xenoRefGene.LENGTH0.6040.0000.613
caePb2.xenoRefGene.LENGTH0.5810.0000.578
caeRem2.xenoRefGene.LENGTH0.4760.0000.479
caeRem3.xenoRefGene.LENGTH0.4520.0000.456
calJac1.genscan.LENGTH0.0960.0120.112
calJac1.nscanGene.LENGTH0.1360.0000.138
calJac1.xenoRefGene.LENGTH0.9840.0000.987
canFam1.ensGene.LENGTH0.4120.0000.411
canFam1.geneSymbol.LENGTH0.0080.0000.009
canFam1.genscan.LENGTH0.0600.0040.075
canFam1.nscanGene.LENGTH0.0600.0040.065
canFam1.refGene.LENGTH0.0080.0000.007
canFam1.xenoRefGene.LENGTH0.7560.0000.765
canFam2.ensGene.LENGTH0.1840.0200.530
canFam2.geneSymbol.LENGTH0.0080.0000.009
canFam2.genscan.LENGTH0.0680.0000.068
canFam2.nscanGene.LENGTH0.0720.0040.076
canFam2.refGene.LENGTH0.0080.0000.008
canFam2.xenoRefGene.LENGTH0.7920.0000.792
cavPor3.ensGene.LENGTH0.4200.0000.445
cavPor3.genscan.LENGTH0.1000.0000.098
cavPor3.nscanGene.LENGTH0.0680.0040.074
cavPor3.xenoRefGene.LENGTH0.7560.0000.811
cb1.xenoRefGene.LENGTH0.5560.0000.557
cb3.xenoRefGene.LENGTH0.4080.0000.412
ce2.geneSymbol.LENGTH0.3920.0160.410
ce2.geneid.LENGTH0.060.000.06
ce2.refGene.LENGTH0.0840.0160.106
ce4.geneSymbol.LENGTH0.0840.0200.104
ce4.refGene.LENGTH0.0800.0240.103
ce4.xenoRefGene.LENGTH0.10.00.1
ce6.ensGene.LENGTH0.1040.0040.109
ce6.geneSymbol.LENGTH0.0720.0320.105
ce6.refGene.LENGTH0.0720.0320.106
ce6.xenoRefGene.LENGTH0.0880.0000.088
ci1.geneSymbol.LENGTH0.0080.0000.008
ci1.refGene.LENGTH0.0080.0000.007
ci1.xenoRefGene.LENGTH0.2280.0000.231
ci2.ensGene.LENGTH0.1000.0040.103
ci2.geneSymbol.LENGTH0.0000.0080.008
ci2.refGene.LENGTH0.0080.0000.007
ci2.xenoRefGene.LENGTH0.3240.0000.415
danRer3.ensGene.LENGTH0.1240.0120.134
danRer3.geneSymbol.LENGTH0.0600.0200.081
danRer3.refGene.LENGTH0.0720.0040.080
danRer4.ensGene.LENGTH0.1880.0040.196
danRer4.geneSymbol.LENGTH0.0720.0080.082
danRer4.genscan.LENGTH0.0680.0040.072
danRer4.nscanGene.LENGTH0.1880.0040.195
danRer4.refGene.LENGTH0.0720.0120.085
danRer5.ensGene.LENGTH0.1600.0000.161
danRer5.geneSymbol.LENGTH0.0840.0040.087
danRer5.refGene.LENGTH0.0520.0280.080
danRer5.vegaGene.LENGTH0.0600.0120.070
danRer5.vegaPseudoGene.LENGTH0.0040.0000.004
danRer6.ensGene.LENGTH0.4600.0120.472
danRer6.geneSymbol.LENGTH0.0680.0080.076
danRer6.refGene.LENGTH0.0720.0000.072
danRer6.xenoRefGene.LENGTH0.6120.0000.619
dm1.geneSymbol.LENGTH0.0760.0200.098
dm1.genscan.LENGTH0.0320.0040.038
dm1.refGene.LENGTH0.0680.0240.090
dm2.geneSymbol.LENGTH0.0800.0160.096
dm2.geneid.LENGTH0.0480.0160.061
dm2.genscan.LENGTH0.0240.0120.038
dm2.nscanGene.LENGTH0.1040.0000.101
dm2.refGene.LENGTH0.0600.0320.092
dm3.geneSymbol.LENGTH0.0840.0000.090
dm3.nscanPasaGene.LENGTH0.0680.0160.085
dm3.refGene.LENGTH0.0760.0000.077
dp2.genscan.LENGTH0.0440.0040.050
dp2.xenoRefGene.LENGTH0.2400.0000.242
dp3.geneid.LENGTH0.0440.0200.062
dp3.genscan.LENGTH0.0680.0040.071
dp3.xenoRefGene.LENGTH0.1160.0320.150
droAna1.geneid.LENGTH0.0720.0080.077
droAna1.genscan.LENGTH0.0280.0000.027
droAna1.xenoRefGene.LENGTH0.3240.0040.329
droAna2.genscan.LENGTH0.0560.0000.055
droAna2.xenoRefGene.LENGTH0.3080.0000.308
droEre1.genscan.LENGTH0.3240.0160.342
droEre1.xenoRefGene.LENGTH0.2960.0000.295
droGri1.genscan.LENGTH0.0600.0000.057
droGri1.xenoRefGene.LENGTH0.2880.0000.305
droMoj1.geneid.LENGTH0.1240.0120.135
droMoj1.genscan.LENGTH0.0600.0000.058
droMoj1.xenoRefGene.LENGTH0.2520.0000.338
droMoj2.genscan.LENGTH0.0480.0080.055
droMoj2.xenoRefGene.LENGTH0.3320.0000.333
droPer1.genscan.LENGTH0.0560.0080.061
droPer1.xenoRefGene.LENGTH0.3280.0040.342
droSec1.genscan.LENGTH0.0400.0080.045
droSec1.xenoRefGene.LENGTH0.3090.0080.315
droSim1.geneid.LENGTH0.0520.0120.062
droSim1.genscan.LENGTH0.0560.0080.073
droSim1.xenoRefGene.LENGTH0.2760.0000.282
droVir1.geneid.LENGTH0.1840.0120.197
droVir1.genscan.LENGTH0.0560.0080.066
droVir1.xenoRefGene.LENGTH0.2920.0000.298
droVir2.genscan.LENGTH0.0400.0160.054
droVir2.xenoRefGene.LENGTH0.3720.0000.372
droYak1.geneid.LENGTH0.0560.0160.073
droYak1.genscan.LENGTH0.0440.0040.048
droYak1.xenoRefGene.LENGTH0.2880.0040.303
droYak2.genscan.LENGTH0.0320.0160.046
droYak2.xenoRefGene.LENGTH0.3000.0080.311
equCab1.geneSymbol.LENGTH0.0040.0040.007
equCab1.geneid.LENGTH0.3880.0120.397
equCab1.nscanGene.LENGTH0.0400.0200.059
equCab1.refGene.LENGTH0.0080.0000.007
equCab1.sgpGene.LENGTH0.0720.0080.079
equCab2.ensGene.LENGTH0.1160.0080.125
equCab2.geneSymbol.LENGTH0.0120.0000.010
equCab2.nscanGene.LENGTH0.0640.0120.076
equCab2.refGene.LENGTH0.0120.0000.010
equCab2.xenoRefGene.LENGTH0.7240.0040.729
felCat3.ensGene.LENGTH0.1320.0000.129
felCat3.geneSymbol.LENGTH0.0000.0040.006
felCat3.geneid.LENGTH1.0280.0041.073
felCat3.genscan.LENGTH0.4440.0040.460
felCat3.nscanGene.LENGTH0.0960.0120.109
felCat3.refGene.LENGTH0.0080.0000.006
felCat3.sgpGene.LENGTH0.1440.0040.148
felCat3.xenoRefGene.LENGTH1.4520.0041.458
fr1.ensGene.LENGTH0.3720.0080.380
fr1.genscan.LENGTH0.0600.0040.065
fr2.ensGene.LENGTH0.1600.0120.170
galGal2.ensGene.LENGTH0.0680.0000.068
galGal2.geneSymbol.LENGTH0.0240.0000.024
galGal2.geneid.LENGTH0.0560.0040.060
galGal2.genscan.LENGTH0.0600.0120.075
galGal2.refGene.LENGTH0.0120.0080.022
galGal2.sgpGene.LENGTH0.0440.0280.070
galGal3.ensGene.LENGTH0.0720.0120.111
galGal3.geneSymbol.LENGTH0.0240.0000.024
galGal3.genscan.LENGTH0.0600.0120.071
galGal3.nscanGene.LENGTH0.0720.0000.094
galGal3.refGene.LENGTH0.0200.0040.022
galGal3.xenoRefGene.LENGTH0.6000.0000.614
gasAcu1.ensGene.LENGTH0.1120.0080.118
gasAcu1.nscanGene.LENGTH0.1720.0080.184
hg16.acembly.LENGTH0.5400.0000.545
hg16.ensGene.LENGTH0.1040.0000.111
hg16.exoniphy.LENGTH0.7360.0080.746
hg16.geneSymbol.LENGTH0.1040.0080.110
hg16.geneid.LENGTH0.0480.0200.069
hg16.genscan.LENGTH0.0680.0000.068
hg16.knownGene.LENGTH0.1560.0040.162
hg16.refGene.LENGTH0.1200.0040.121
hg16.sgpGene.LENGTH0.0680.0040.072
hg17.acembly.LENGTH0.8360.0000.839
hg17.acescan.LENGTH0.0120.0000.015
hg17.ccdsGene.LENGTH0.0240.0080.033
hg17.ensGene.LENGTH0.1280.0160.144
hg17.exoniphy.LENGTH0.4480.0040.455
hg17.geneSymbol.LENGTH0.1160.0000.130
hg17.geneid.LENGTH0.1760.0080.183
hg17.genscan.LENGTH0.0800.0040.082
hg17.knownGene.LENGTH0.1360.0080.145
hg17.refGene.LENGTH0.1240.0040.127
hg17.sgpGene.LENGTH0.4200.0000.421
hg17.vegaGene.LENGTH0.0400.0160.057
hg17.vegaPseudoGene.LENGTH0.0200.0040.025
hg17.xenoRefGene.LENGTH0.2440.0040.256
hg18.acembly.LENGTH0.4920.0040.504
hg18.acescan.LENGTH0.0160.0000.015
hg18.ccdsGene.LENGTH0.1240.0120.135
hg18.ensGene.LENGTH0.2320.0080.243
hg18.exoniphy.LENGTH0.9040.0040.957
hg18.geneSymbol.LENGTH0.1160.0000.121
hg18.geneid.LENGTH0.0840.0040.118
hg18.genscan.LENGTH0.0680.0040.073
hg18.knownGene.LENGTH0.1480.0120.162
hg18.knownGeneOld3.LENGTH0.0810.0080.087
hg18.refGene.LENGTH0.1080.0040.113
hg18.sgpGene.LENGTH0.0920.0000.097
hg18.sibGene.LENGTH0.8000.0121.149
hg18.xenoRefGene.LENGTH0.3920.0160.772
hg19.ccdsGene.LENGTH0.0480.0120.203
hg19.ensGene.LENGTH0.3720.0080.389
hg19.exoniphy.LENGTH0.5160.0000.518
hg19.geneSymbol.LENGTH0.1120.0040.117
hg19.knownGene.LENGTH0.5960.0080.606
hg19.nscanGene.LENGTH0.1520.0000.162
hg19.refGene.LENGTH0.1000.0120.115
hg19.xenoRefGene.LENGTH0.4040.0080.410
loxAfr3.xenoRefGene.LENGTH0.9080.0040.914
mm7.ensGene.LENGTH0.1320.0040.136
mm7.geneSymbol.LENGTH0.10.00.1
mm7.geneid.LENGTH0.1800.0040.185
mm7.genscan.LENGTH0.0760.0080.087
mm7.knownGene.LENGTH0.1200.0000.123
mm7.refGene.LENGTH0.1040.0040.109
mm7.sgpGene.LENGTH0.0920.0080.103
mm7.xenoRefGene.LENGTH0.4200.0080.564
mm8.ccdsGene.LENGTH0.0280.0120.037
mm8.ensGene.LENGTH0.1000.0120.113
mm8.geneSymbol.LENGTH0.1080.0040.115
mm8.geneid.LENGTH0.0920.0120.106
mm8.genscan.LENGTH0.1280.0080.147
mm8.knownGene.LENGTH0.1040.0040.110
mm8.nscanGene.LENGTH0.0760.0000.074
mm8.refGene.LENGTH0.1000.0000.098
mm8.sgpGene.LENGTH0.1000.0040.104
mm8.sibGene.LENGTH0.3880.0000.395
mm8.xenoRefGene.LENGTH0.6280.0160.649
mm9.acembly.LENGTH0.3760.0000.379
mm9.ccdsGene.LENGTH0.1120.0120.126
mm9.ensGene.LENGTH0.2040.0120.216
mm9.exoniphy.LENGTH0.9480.0040.957
mm9.geneSymbol.LENGTH0.0840.0000.087
mm9.geneid.LENGTH0.0880.0120.101
mm9.genscan.LENGTH0.0640.0040.068
mm9.knownGene.LENGTH0.1160.0240.138
mm9.nscanGene.LENGTH0.0600.0040.066
mm9.refGene.LENGTH0.0880.0000.113
mm9.sgpGene.LENGTH0.0960.0000.098
mm9.xenoRefGene.LENGTH0.5560.0120.565
monDom1.genscan.LENGTH0.0760.0080.118
monDom4.ensGene.LENGTH0.0840.0120.103
monDom4.geneSymbol.LENGTH0.0000.0040.006
monDom4.genscan.LENGTH0.0480.0400.090
monDom4.nscanGene.LENGTH0.0760.0200.097
monDom4.refGene.LENGTH0.0040.0000.007
monDom4.xenoRefGene.LENGTH0.5320.0160.548
monDom5.ensGene.LENGTH0.1440.0000.146
monDom5.geneSymbol.LENGTH0.0000.0040.006
monDom5.genscan.LENGTH0.4000.0120.413
monDom5.nscanGene.LENGTH0.1080.0040.110
monDom5.refGene.LENGTH0.0040.0000.005
monDom5.xenoRefGene.LENGTH0.6680.0000.681
ornAna1.ensGene.LENGTH0.1080.0120.122
ornAna1.geneSymbol.LENGTH0.0040.0000.004
ornAna1.refGene.LENGTH0.0000.0040.005
ornAna1.xenoRefGene.LENGTH0.6160.0160.643
oryLat2.ensGene.LENGTH0.0920.0120.107
oryLat2.geneSymbol.LENGTH0.0040.0000.006
oryLat2.refGene.LENGTH0.0040.0000.006
oryLat2.xenoRefGene.LENGTH0.7040.0000.700
panTro1.ensGene.LENGTH0.1200.0000.123
panTro1.geneid.LENGTH0.0600.0240.083
panTro1.genscan.LENGTH0.0680.0080.074
panTro1.xenoRefGene.LENGTH0.1400.0200.159
panTro2.ensGene.LENGTH0.1400.0000.143
panTro2.geneSymbol.LENGTH0.1040.0080.114
panTro2.genscan.LENGTH0.1120.0040.119
panTro2.nscanGene.LENGTH0.0640.0000.067
panTro2.refGene.LENGTH0.1000.0120.114
panTro2.xenoRefGene.LENGTH0.5880.0000.589
petMar1.xenoRefGene.LENGTH0.6570.0240.692
ponAbe2.ensGene.LENGTH0.1000.0080.112
ponAbe2.geneSymbol.LENGTH0.0040.0120.018
ponAbe2.genscan.LENGTH0.0640.0000.072
ponAbe2.nscanGene.LENGTH0.0720.0000.071
ponAbe2.refGene.LENGTH0.0160.0040.020
ponAbe2.xenoRefGene.LENGTH0.8200.0040.829
priPac1.xenoRefGene.LENGTH0.4200.0000.423
rheMac2.ensGene.LENGTH0.1640.0040.170
rheMac2.geneSymbol.LENGTH0.0120.0000.009
rheMac2.geneid.LENGTH0.1680.0040.176
rheMac2.nscanGene.LENGTH0.0760.0000.076
rheMac2.refGene.LENGTH0.0080.0040.009
rheMac2.sgpGene.LENGTH0.0840.0080.094
rheMac2.xenoRefGene.LENGTH0.6360.0000.640
rn3.ensGene.LENGTH0.1520.0080.161
rn3.geneSymbol.LENGTH0.0840.0080.092
rn3.geneid.LENGTH0.0600.0000.058
rn3.genscan.LENGTH0.1200.0040.136
rn3.knownGene.LENGTH0.0320.0040.038
rn3.nscanGene.LENGTH0.0640.0000.069
rn3.refGene.LENGTH0.0640.0120.078
rn3.sgpGene.LENGTH0.0680.0000.068
rn3.xenoRefGene.LENGTH0.680.000.68
rn4.ensGene.LENGTH0.3120.0040.315
rn4.geneSymbol.LENGTH0.0680.0200.089
rn4.geneid.LENGTH0.1080.0120.119
rn4.genscan.LENGTH0.0760.0000.076
rn4.knownGene.LENGTH0.0240.0120.036
rn4.nscanGene.LENGTH0.0560.0280.086
rn4.refGene.LENGTH0.0680.0080.075
rn4.sgpGene.LENGTH0.1000.0000.102
rn4.xenoRefGene.LENGTH0.3960.0000.396
sacCer1.ensGene.LENGTH0.0200.0080.029
sacCer2.ensGene.LENGTH0.0200.0080.027
strPur1.geneSymbol.LENGTH0.0080.0000.007
strPur1.genscan.LENGTH0.1320.0000.132
strPur1.refGene.LENGTH0.0040.0000.007
strPur1.xenoRefGene.LENGTH0.5680.0000.592
strPur2.geneSymbol.LENGTH0.0040.0000.006
strPur2.genscan.LENGTH0.2000.0040.207
strPur2.refGene.LENGTH0.0040.0000.006
strPur2.xenoRefGene.LENGTH0.7840.0000.796
supportedGeneIDs0.0160.0000.016
supportedGenomes0.0920.0200.233
taeGut1.ensGene.LENGTH0.4640.0000.464
taeGut1.geneSymbol.LENGTH0.0040.0000.004
taeGut1.genscan.LENGTH0.0440.0040.049
taeGut1.nscanGene.LENGTH0.0280.0120.040
taeGut1.refGene.LENGTH0.0000.0040.004
taeGut1.xenoRefGene.LENGTH0.4680.0080.480
tetNig1.ensGene.LENGTH0.0920.0280.120
tetNig1.geneid.LENGTH0.0800.0080.087
tetNig1.genscan.LENGTH0.0760.0080.085
tetNig1.nscanGene.LENGTH0.0800.0120.091
tetNig2.ensGene.LENGTH0.0760.0200.096
unfactor0.0080.0000.007
xenTro1.genscan.LENGTH0.1000.0000.099
xenTro2.ensGene.LENGTH0.1120.0120.125
xenTro2.geneSymbol.LENGTH0.0400.0160.056
xenTro2.genscan.LENGTH0.1640.0160.182
xenTro2.refGene.LENGTH0.0400.0120.050