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BioC experimental data: CHECK report for RRBSdata on zin1

This page was generated on 2015-04-08 17:40:53 -0700 (Wed, 08 Apr 2015).

Package 184/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RRBSdata 1.0.0
Katja Hebestreit
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/RRBSdata
Last Changed Rev: 3139 / Revision: 3266
Last Changed Date: 2014-12-01 21:33:32 -0800 (Mon, 01 Dec 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: RRBSdata
Version: 1.0.0
Command: /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings RRBSdata_1.0.0.tar.gz
StartedAt: 2015-04-08 08:53:45 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 08:58:05 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 260.3 seconds
RetCode: 0
Status:  OK 
CheckDir: RRBSdata.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings RRBSdata_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.0-data-experiment/meat/RRBSdata.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RRBSdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RRBSdata’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RRBSdata’ can be installed ... [12s/12s] OK
* checking installed package size ... NOTE
  installed size is 74.0Mb
  sub-directories of 1Mb or more:
    data  73.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [81s/82s] OK
Examples with CPU or elapsed time > 5s
       user system elapsed
rrbs 67.716  0.988  69.256
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-3.0-data-experiment/meat/RRBSdata.Rcheck/00check.log’
for details.

RRBSdata.Rcheck/00install.out:

* installing *source* package ‘RRBSdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RRBSdata)

RRBSdata.Rcheck/RRBSdata-Ex.timings:

nameusersystemelapsed
diffMethCpGs0.8120.0080.818
islands0.4080.0040.442
rrbs67.716 0.98869.256