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BioC experimental data: CHECK report for FunciSNP.data on moscato1

This page was generated on 2015-04-08 17:41:07 -0700 (Wed, 08 Apr 2015).

Package 85/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FunciSNP.data 1.1.1
Simon G. Coetzee
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/FunciSNP.data
Last Changed Rev: 3075 / Revision: 3266
Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  ERROR 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ ERROR ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  ERROR  OK 

Summary

Package: FunciSNP.data
Version: 1.1.1
Command: rm -rf FunciSNP.data.buildbin-libdir FunciSNP.data.Rcheck && mkdir FunciSNP.data.buildbin-libdir FunciSNP.data.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FunciSNP.data.buildbin-libdir FunciSNP.data_1.1.1.tar.gz >FunciSNP.data.Rcheck\00install.out 2>&1 && cp FunciSNP.data.Rcheck\00install.out FunciSNP.data-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=FunciSNP.data.buildbin-libdir --install="check:FunciSNP.data-install.out" --force-multiarch --no-vignettes --timings FunciSNP.data_1.1.1.tar.gz
StartedAt: 2015-04-08 10:17:38 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 10:20:22 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 164.6 seconds
RetCode: 1
Status:  ERROR  
CheckDir: FunciSNP.data.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   rm -rf FunciSNP.data.buildbin-libdir FunciSNP.data.Rcheck && mkdir FunciSNP.data.buildbin-libdir FunciSNP.data.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FunciSNP.data.buildbin-libdir FunciSNP.data_1.1.1.tar.gz >FunciSNP.data.Rcheck\00install.out 2>&1 && cp FunciSNP.data.Rcheck\00install.out FunciSNP.data-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=FunciSNP.data.buildbin-libdir --install="check:FunciSNP.data-install.out" --force-multiarch --no-vignettes --timings FunciSNP.data_1.1.1.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/FunciSNP.data.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FunciSNP.data/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'FunciSNP.data' version '1.1.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FunciSNP.data' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data      3.2Mb
    extdata   2.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'FunciSNP.data-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lincRNA.hg19.rda
> ### Title: Known long intergentic non coding RNA
> ### Aliases: lincRNA.hg19.rda lincRNA
> ### Keywords: datasets
> 
> ### ** Examples
> 
> lincRNA
RangedData with 14331 rows and 2 value columns across 41 spaces
Error in end(PartitioningByEnd(x)) : 
  error in evaluating the argument 'x' in selecting a method for function 'end': Error: could not find function "PartitioningByEnd"
Calls: <Anonymous> ... <Anonymous> -> fast_path_FUN -> .unlist_NL_subscript -> end
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'FunciSNP.data-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lincRNA.hg19.rda
> ### Title: Known long intergentic non coding RNA
> ### Aliases: lincRNA.hg19.rda lincRNA
> ### Keywords: datasets
> 
> ### ** Examples
> 
> lincRNA
RangedData with 14331 rows and 2 value columns across 41 spaces
Error in end(PartitioningByEnd(x)) : 
  error in evaluating the argument 'x' in selecting a method for function 'end': Error: could not find function "PartitioningByEnd"
Calls: <Anonymous> ... <Anonymous> -> fast_path_FUN -> .unlist_NL_subscript -> end
Execution halted

FunciSNP.data.Rcheck/00install.out:


install for i386

* installing *source* package 'FunciSNP.data' ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'FunciSNP.data' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FunciSNP.data' as FunciSNP.data_1.1.1.zip
* DONE (FunciSNP.data)

FunciSNP.data.Rcheck/examples_i386/FunciSNP.data-Ex.timings:

nameusersystemelapsed
FunciSNP.builtin.features0.530.000.53

FunciSNP.data.Rcheck/examples_x64/FunciSNP.data-Ex.timings:

nameusersystemelapsed
FunciSNP.builtin.features0.280.000.28