BioC experimental data: CHECK report for facopy.annot on perceval

Package: facopy.annot

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch facopy.annot_1.0.0.tar.gz

StartedAt: 2015-04-08 09:38:34 -0700 (Wed, 08 Apr 2015)

EndedAt: 2015-04-08 09:40:07 -0700 (Wed, 08 Apr 2015)

EllapsedTime: 93.0 seconds

RetCode: 0

Status:  OK

CheckDir: facopy.annot.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch facopy.annot_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/facopy.annot.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘facopy.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘facopy.annot’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘facopy.annot’ can be installed ... [3s/9s] OK
* checking installed package size ... NOTE
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [6s/11s] OK
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/facopy.annot.Rcheck/00check.log’
for details.

* installing *source* package ‘facopy.annot’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (facopy.annot)

name	user	system	elapsed
hg18_armLimits	0.034	0.006	0.047
hg18_db_gsk_bladder	0.022	0.001	0.051
hg18_db_gsk_blood	0.026	0.001	0.028
hg18_db_gsk_bone	0.014	0.000	0.015
hg18_db_gsk_brain	0.02	0.00	0.02
hg18_db_gsk_breast	0.069	0.001	0.110
hg18_db_gsk_cervix	0.019	0.001	0.036
hg18_db_gsk_cns	0.022	0.001	0.048
hg18_db_gsk_colon	0.023	0.001	0.037
hg18_db_gsk_connective_tissue	0.016	0.001	0.033
hg18_db_gsk_esophagus	0.017	0.001	0.028
hg18_db_gsk_eye	0.007	0.001	0.052
hg18_db_gsk_kidney	0.020	0.000	0.031
hg18_db_gsk_liver	0.021	0.001	0.040
hg18_db_gsk_lung	0.029	0.001	0.046
hg18_db_gsk_muscle	0.015	0.001	0.030
hg18_db_gsk_ovary	0.020	0.001	0.020
hg18_db_gsk_pancreas	0.018	0.001	0.018
hg18_db_gsk_pharynx	0.014	0.000	0.025
hg18_db_gsk_placenta	0.019	0.000	0.030
hg18_db_gsk_prostate	0.020	0.000	0.021
hg18_db_gsk_rectum	0.017	0.001	0.018
hg18_db_gsk_sarcoma	0.012	0.001	0.031
hg18_db_gsk_stomach	0.017	0.001	0.038
hg18_db_gsk_synovium	0.005	0.001	0.006
hg18_db_gsk_thyroid	0.017	0.000	0.018
hg18_db_gsk_uterus	0.020	0.001	0.050
hg18_db_nci60	0.029	0.000	0.030
hg18_db_tcga_blca	0.027	0.000	0.048
hg18_db_tcga_brca	0.030	0.000	0.049
hg18_db_tcga_cesc	0.027	0.001	0.041
hg18_db_tcga_coad	0.030	0.000	0.065
hg18_db_tcga_gbm	0.027	0.000	0.044
hg18_db_tcga_hnsc	0.029	0.000	0.063
hg18_db_tcga_kirc	0.027	0.000	0.052
hg18_db_tcga_kirp	0.027	0.000	0.033
hg18_db_tcga_lgg	0.027	0.000	0.041
hg18_db_tcga_lihc	0.028	0.000	0.039
hg18_db_tcga_luad	0.029	0.000	0.051
hg18_db_tcga_lusc	0.029	0.001	0.063
hg18_db_tcga_ov	0.030	0.001	0.070
hg18_db_tcga_prad	0.024	0.001	0.025
hg18_db_tcga_read	0.029	0.000	0.030
hg18_db_tcga_stad	0.028	0.001	0.039
hg18_db_tcga_thca	0.024	0.000	0.035
hg18_db_tcga_ucec	0.027	0.001	0.032
hg18_feature_cancergene	0.011	0.001	0.025
hg18_feature_ensembl	0.396	0.006	0.857
hg18_feature_lincRNA	0.100	0.001	0.169
hg18_feature_mirnas	0.012	0.000	0.016
hg18_feature_oncogene	0.006	0.000	0.007
hg18_feature_tumorsupressor	0.007	0.000	0.007
hg19_armLimits	0.003	0.001	0.004
hg19_db_gsk_bladder	0.020	0.001	0.036
hg19_db_gsk_blood	0.025	0.002	0.052
hg19_db_gsk_bone	0.015	0.001	0.037
hg19_db_gsk_brain	0.024	0.001	0.049
hg19_db_gsk_breast	0.026	0.001	0.058
hg19_db_gsk_cervix	0.021	0.001	0.021
hg19_db_gsk_cns	0.025	0.001	0.062
hg19_db_gsk_colon	0.022	0.001	0.038
hg19_db_gsk_connective_tissue	0.017	0.001	0.041
hg19_db_gsk_esophagus	0.019	0.001	0.058
hg19_db_gsk_eye	0.006	0.001	0.006
hg19_db_gsk_kidney	0.023	0.001	0.031
hg19_db_gsk_liver	0.023	0.001	0.044
hg19_db_gsk_lung	0.029	0.001	0.071
hg19_db_gsk_muscle	0.021	0.000	0.044
hg19_db_gsk_ovary	0.018	0.000	0.028
hg19_db_gsk_pancreas	0.019	0.000	0.030
hg19_db_gsk_pharynx	0.014	0.000	0.054
hg19_db_gsk_placenta	0.016	0.000	0.039
hg19_db_gsk_prostate	0.023	0.000	0.054
hg19_db_gsk_rectum	0.014	0.001	0.022
hg19_db_gsk_sarcoma	0.011	0.001	0.020
hg19_db_gsk_stomach	0.018	0.001	0.032
hg19_db_gsk_synovium	0.004	0.001	0.006
hg19_db_gsk_thyroid	0.020	0.001	0.035
hg19_db_gsk_uterus	0.019	0.000	0.040
hg19_db_nci60	0.028	0.000	0.060
hg19_db_tcga_blca	0.031	0.001	0.046
hg19_db_tcga_brca	0.029	0.001	0.039
hg19_db_tcga_cesc	0.031	0.001	0.058
hg19_db_tcga_coad	0.033	0.001	0.072
hg19_db_tcga_gbm	0.028	0.001	0.043
hg19_db_tcga_hnsc	0.031	0.001	0.055
hg19_db_tcga_kirc	0.032	0.001	0.059
hg19_db_tcga_kirp	0.033	0.001	0.064
hg19_db_tcga_lgg	0.028	0.001	0.047
hg19_db_tcga_lihc	0.029	0.001	0.057
hg19_db_tcga_luad	0.032	0.001	0.063
hg19_db_tcga_lusc	0.028	0.001	0.087
hg19_db_tcga_ov	0.031	0.000	0.054
hg19_db_tcga_prad	0.025	0.000	0.034
hg19_db_tcga_read	0.028	0.001	0.064
hg19_db_tcga_stad	0.035	0.001	0.062
hg19_db_tcga_thca	0.025	0.001	0.037
hg19_db_tcga_ucec	0.032	0.001	0.051
hg19_feature_cancergene	0.010	0.001	0.025
hg19_feature_ensembl	0.980	0.012	1.649
hg19_feature_lincRNA	0.025	0.001	0.026
hg19_feature_mirnas	0.024	0.001	0.059
hg19_feature_oncogene	0.007	0.001	0.017
hg19_feature_tumorsupressor	0.006	0.000	0.007
mm8_armLimits	0.003	0.000	0.004
mm8_feature_ensembl	0.900	0.010	1.435
mm8_feature_mirnas	0.018	0.000	0.028