BioC 3.0: CHECK report for paxtoolsr on oaxaca

Package: paxtoolsr

Version: 1.0.13

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch paxtoolsr_1.0.13.tar.gz

StartedAt: 2015-04-10 02:03:08 -0700 (Fri, 10 Apr 2015)

EndedAt: 2015-04-10 02:04:13 -0700 (Fri, 10 Apr 2015)

EllapsedTime: 65.0 seconds

RetCode: 1

Status:  ERROR

CheckDir: paxtoolsr.Rcheck

Warnings: NA

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch paxtoolsr_1.0.13.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.0-bioc/meat/paxtoolsr.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘paxtoolsr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘paxtoolsr’ version ‘1.0.13’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘paxtoolsr’ can be installed ... [5s/9s] OK
* checking installed package size ... NOTE
  installed size is 26.9Mb
  sub-directories of 1Mb or more:
    extdata   4.9Mb
    java     21.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘paxtoolsr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fetch
> ### Title: Fetch a set of IDs from a BioPAX OWL file
> ### Aliases: fetch
> 
> ### ** Examples
> 
> outFile <- tempfile()
> tmp <- getPc(uri="http://identifiers.org/reactome/REACT_12034.3",
+              format="BIOPAX",
+              verbose=TRUE)
URL:  http://purl.org/pc2/7/get?uri=http://identifiers.org/reactome/REACT_12034.3&format=BIOPAX 
Error in getPcRequest(url, verbose) : 
  ERROR: Code: 503 Message: Server is temporarily unavailable due to regular maintenance (PC Webservice Error)
Calls: getPc -> getPcRequest
Execution halted

* installing *source* package ‘paxtoolsr’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (paxtoolsr)

name	user	system	elapsed
downloadPc	0	0	0