hypergraph 1.38.1
Bioconductor Package Maintainer
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/hypergraph | | Last Changed Rev: 95690 / Revision: 102249 | | Last Changed Date: 2014-10-17 08:28:11 -0700 (Fri, 17 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ WARNINGS ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | WARNINGS | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf hypergraph.buildbin-libdir hypergraph.Rcheck && mkdir hypergraph.buildbin-libdir hypergraph.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hypergraph.buildbin-libdir hypergraph_1.38.1.tar.gz >hypergraph.Rcheck\00install.out 2>&1 && cp hypergraph.Rcheck\00install.out hypergraph-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=hypergraph.buildbin-libdir --install="check:hypergraph-install.out" --force-multiarch --no-vignettes --timings hypergraph_1.38.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/hypergraph.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hypergraph/DESCRIPTION' ... OK
* this is package 'hypergraph' version '1.38.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hypergraph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'methods' which was already attached by Depends.
Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'hypergraph/R/AllClasses.R':
.onLoad calls:
require("methods", quietly = TRUE)
Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... NOTE
prepare_Rd: kCores.Rd:29: Dropping empty section \seealso
prepare_Rd: vCover.Rd:32: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
inst/unitTests/Makefile
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif. See section 'Writing portable packages' in
the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking PDF version of manual ... OK
* DONE
WARNING: There was 1 warning.
NOTE: There were 3 notes.
See
'D:/biocbld/bbs-3.0-bioc/meat/hypergraph.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'hypergraph' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'head' from package 'utils' in package 'hypergraph'
Creating a generic function for 'tail' from package 'utils' in package 'hypergraph'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'hypergraph' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hypergraph' as hypergraph_1.38.1.zip
* DONE (hypergraph)