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BioC 3.0: CHECK report for flowPlots on moscato1

This page was generated on 2015-04-10 09:46:59 -0700 (Fri, 10 Apr 2015).

Package 316/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPlots 1.14.0
N. Hawkins
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/flowPlots
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: flowPlots
Version: 1.14.0
Command: rm -rf flowPlots.buildbin-libdir flowPlots.Rcheck && mkdir flowPlots.buildbin-libdir flowPlots.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowPlots.buildbin-libdir flowPlots_1.14.0.tar.gz >flowPlots.Rcheck\00install.out 2>&1 && cp flowPlots.Rcheck\00install.out flowPlots-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=flowPlots.buildbin-libdir --install="check:flowPlots-install.out" --force-multiarch --no-vignettes --timings flowPlots_1.14.0.tar.gz
StartedAt: 2015-04-10 01:09:36 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 01:10:54 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 78.4 seconds
RetCode: 0
Status:  OK  
CheckDir: flowPlots.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf flowPlots.buildbin-libdir flowPlots.Rcheck && mkdir flowPlots.buildbin-libdir flowPlots.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowPlots.buildbin-libdir flowPlots_1.14.0.tar.gz >flowPlots.Rcheck\00install.out 2>&1 && cp flowPlots.Rcheck\00install.out flowPlots-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=flowPlots.buildbin-libdir --install="check:flowPlots-install.out" --force-multiarch --no-vignettes --timings flowPlots_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/flowPlots.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowPlots/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowPlots' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowPlots' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [15s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
StackedData-class 6.93      0    6.93
** running examples for arch 'x64' ... [18s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
StackedData-class 9.01      0    9.02
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-3.0-bioc/meat/flowPlots.Rcheck/00check.log'
for details.

flowPlots.Rcheck/00install.out:


install for i386

* installing *source* package 'flowPlots' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowPlots' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPlots' as flowPlots_1.14.0.zip
* DONE (flowPlots)

flowPlots.Rcheck/examples_i386/flowPlots-Ex.timings:

nameusersystemelapsed
GroupListBoxplot0.120.000.13
StackedData-class6.930.006.93
adultsNeonates000
computeMarginalData-methods1.620.001.62
computeMarkers-methods000
computePFDData-methods1.450.001.45
computePFDGroupStatsList0.260.000.74
computePFDPartsData-methods1.580.011.59
computeProfileData-methods1.570.001.57
legendPFDStatsGroupNames0.080.000.08
makeBarplotData0.020.000.02
makeDataList0.050.000.04
makeTernaryData0.070.000.08
marginalDF000
marginalData-methods0.020.000.02
markerMatrix000
markers-methods000
pfdDF000
pfdData-methods0.000.020.01
pfdPartsData-methods000
pfdPartsList000
profileDF000
profileData-methods0.010.000.02
readStackedData-methods0.070.000.06
stackedData-methods0.090.000.10

flowPlots.Rcheck/examples_x64/flowPlots-Ex.timings:

nameusersystemelapsed
GroupListBoxplot0.190.000.18
StackedData-class9.010.009.02
adultsNeonates0.020.000.02
computeMarginalData-methods2.20.02.2
computeMarkers-methods000
computePFDData-methods1.670.001.66
computePFDGroupStatsList0.200.040.25
computePFDPartsData-methods2.110.022.13
computeProfileData-methods2.020.002.02
legendPFDStatsGroupNames0.080.000.08
makeBarplotData0.020.000.02
makeDataList0.050.000.04
makeTernaryData0.090.000.10
marginalDF000
marginalData-methods000
markerMatrix000
markers-methods0.010.000.01
pfdDF000
pfdData-methods000
pfdPartsData-methods000
pfdPartsList000
profileDF000
profileData-methods000
readStackedData-methods0.060.000.06
stackedData-methods0.050.010.06