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BioC 3.0: INSTALL report for VariantFiltering on zin1

This page was generated on 2015-04-10 09:41:56 -0700 (Fri, 10 Apr 2015).

Package 913/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VariantFiltering 1.2.14
Robert Castelo
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/VariantFiltering
Last Changed Rev: 98697 / Revision: 102249
Last Changed Date: 2015-01-26 00:55:46 -0800 (Mon, 26 Jan 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64 [ OK ] OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: VariantFiltering
Version: 1.2.14
Command: /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD INSTALL VariantFiltering
StartedAt: 2015-04-09 17:15:50 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 17:16:15 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 25.5 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD INSTALL VariantFiltering
###
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* installing to library ‘/home/biocbuild/bbs-3.0-bioc/R/library’
* installing *source* package ‘VariantFiltering’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.0-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.0-bioc/R/library/S4Vectors/include" -I"/home/biocbuild/bbs-3.0-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.0-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.0-bioc/R/library/Biostrings/include"   -fpic  -g -O2  -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.0-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.0-bioc/R/library/S4Vectors/include" -I"/home/biocbuild/bbs-3.0-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.0-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.0-bioc/R/library/Biostrings/include"   -fpic  -g -O2  -Wall -c R_init_VariantFiltering.c -o R_init_VariantFiltering.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.0-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.0-bioc/R/library/S4Vectors/include" -I"/home/biocbuild/bbs-3.0-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.0-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.0-bioc/R/library/Biostrings/include"   -fpic  -g -O2  -Wall -c methods-WeightMatrix.c -o methods-WeightMatrix.o
methods-WeightMatrix.c: In function ‘scoss_wm_score_DNAStringSet’:
methods-WeightMatrix.c:123:23: warning: unused variable ‘k’ [-Wunused-variable]
gcc -std=gnu99 -shared -L/home/biocbuild/bbs-3.0-bioc/R/lib -L/usr/local/lib -o VariantFiltering.so Biostrings_stubs.o R_init_VariantFiltering.o methods-WeightMatrix.o -L/home/biocbuild/bbs-3.0-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.0-bioc/R/library/VariantFiltering/libs
** R
** inst
** preparing package for lazy loading
Note: the specification for S3 class “AsIs” in package ‘RJSONIO’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class “AsIs” in package ‘RJSONIO’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
* DONE (VariantFiltering)