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BioC 3.0: BUILD BIN report for TurboNorm on perceval

This page was generated on 2015-02-08 09:54:34 -0800 (Sun, 08 Feb 2015).

Package 906/935HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TurboNorm 1.14.0
Maarten van Iterson
Snapshot Date: 2015-02-07 16:20:12 -0800 (Sat, 07 Feb 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/TurboNorm
Last Changed Rev: 95439 / Revision: 99197
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: TurboNorm
Version: 1.14.0
Command: rm -rf TurboNorm.buildbin-libdir && mkdir TurboNorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TurboNorm_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TurboNorm.buildbin-libdir
StartedAt: 2015-02-08 08:51:26 -0800 (Sun, 08 Feb 2015)
EndedAt: 2015-02-08 08:51:33 -0800 (Sun, 08 Feb 2015)
EllapsedTime: 7.2 seconds
RetCode: 0
Status:  OK 
PackageFile: TurboNorm_1.14.0.tgz
PackageFileSize: 653.8 KiB

Command output

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###
### Running command:
###
###   rm -rf TurboNorm.buildbin-libdir && mkdir TurboNorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TurboNorm_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TurboNorm.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TurboNorm.buildbin-libdir TurboNorm_1.14.0.tar.gz'
>>>>>>> 

* installing *source* package ‘TurboNorm’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c Rinit.c -o Rinit.o
Rinit.c:12: warning: missing braces around initializer
Rinit.c:12: warning: (near initialization for ‘cMethods[2]’)
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c binners.c -o binners.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o TurboNorm.so Rinit.o binners.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/TurboNorm.buildbin-libdir/TurboNorm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (TurboNorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"