Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

BioC 3.0: BUILD BIN report for ShortRead on moscato1

This page was generated on 2015-04-10 09:45:16 -0700 (Fri, 10 Apr 2015).

Package 819/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ShortRead 1.24.0
Bioconductor Package Maintainer
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/ShortRead
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS [ OK ]
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: ShortRead
Version: 1.24.0
Command: cd ShortRead.buildbin-libdir/ShortRead && zip -r ../../ShortRead_1.24.0.zip . & cd ../..
StartedAt: 2015-04-10 07:33:24 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 07:33:38 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 13.5 seconds
RetCode: 0
Status:  OK  
PackageFile: ShortRead_1.24.0.zip
PackageFileSize: 8.381 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd ShortRead.buildbin-libdir/ShortRead && zip -r ../../ShortRead_1.24.0.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (188 bytes security) (deflated 60%)
  adding: DESCRIPTION (188 bytes security) (deflated 44%)
  adding: doc/ (256 bytes security) (stored 0%)
  adding: doc/index.html (188 bytes security) (deflated 57%)
  adding: doc/Overview.pdf (188 bytes security) (deflated 11%)
  adding: doc/Overview.R (188 bytes security) (deflated 77%)
  adding: doc/Overview.Rnw (188 bytes security) (deflated 62%)
  adding: extdata/ (256 bytes security) (stored 0%)
  adding: extdata/bowtie/ (256 bytes security) (stored 0%)
  adding: extdata/bowtie/s_1_aligned_bowtie.txt (188 bytes security) (deflated 73%)
  adding: extdata/Data/ (256 bytes security) (stored 0%)
  adding: extdata/Data/C1-36Firecrest/ (256 bytes security) (stored 0%)
  adding: extdata/Data/C1-36Firecrest/Bustard/ (256 bytes security) (stored 0%)
  adding: extdata/Data/C1-36Firecrest/Bustard/GERALD/ (256 bytes security) (stored 0%)
  adding: extdata/Data/C1-36Firecrest/Bustard/GERALD/s_1_sequence.txt (188 bytes security) (deflated 72%)
  adding: extdata/Data/C1-36Firecrest/Bustard/GERALD/s_2_export.txt (188 bytes security) (deflated 71%)
  adding: extdata/Data/C1-36Firecrest/Bustard/GERALD/s_5_0001_realign.txt (188 bytes security) (deflated 76%)
  adding: extdata/Data/C1-36Firecrest/Bustard/s_1_0001_prb.txt (188 bytes security) (deflated 94%)
  adding: extdata/Data/C1-36Firecrest/Bustard/s_1_0001_seq.txt (188 bytes security) (deflated 65%)
  adding: extdata/Data/C1-36Firecrest/Bustard/s_1_1_0001_qseq.txt (188 bytes security) (deflated 66%)
  adding: extdata/Data/C1-36Firecrest/s_1_0001_int.txt (188 bytes security) (deflated 58%)
  adding: extdata/Data/C1-36Firecrest/s_1_0001_nse.txt (188 bytes security) (deflated 94%)
  adding: extdata/E-MTAB-1147/ (256 bytes security) (stored 0%)
  adding: extdata/E-MTAB-1147/ERR127302_1_subset.fastq.gz (188 bytes security) (deflated 0%)
  adding: extdata/E-MTAB-1147/ERR127302_2_subset.fastq.gz (188 bytes security) (deflated 0%)
  adding: extdata/maq/ (256 bytes security) (stored 0%)
  adding: extdata/maq/out.aln.1.txt (188 bytes security) (deflated 93%)
  adding: extdata/maq/out.aln.2.txt (188 bytes security) (deflated 94%)
  adding: help/ (256 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 85%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: help/ShortRead.rdb (188 bytes security) (deflated 1%)
  adding: help/ShortRead.rdx (188 bytes security) (stored 0%)
  adding: html/ (256 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 91%)
  adding: html/R.css (188 bytes security) (deflated 70%)
  adding: INDEX (188 bytes security) (deflated 72%)
  adding: libs/ (256 bytes security) (stored 0%)
  adding: libs/i386/ (256 bytes security) (stored 0%)
  adding: libs/i386/ShortRead.dll (188 bytes security) (deflated 62%)
  adding: libs/x64/ (256 bytes security) (stored 0%)
  adding: libs/x64/ShortRead.dll (188 bytes security) (deflated 63%)
  adding: MD5 (188 bytes security) (deflated 53%)
  adding: Meta/ (256 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (deflated 0%)
  adding: Meta/links.rds (188 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 50%)
  adding: NEWS (188 bytes security) (deflated 63%)
  adding: R/ (256 bytes security) (stored 0%)
  adding: R/ShortRead (188 bytes security) (deflated 41%)
  adding: R/ShortRead.rdb (188 bytes security) (deflated 31%)
  adding: R/ShortRead.rdx (188 bytes security) (deflated 4%)
  adding: script/ (256 bytes security) (stored 0%)
  adding: script/qa-test.R (188 bytes security) (deflated 37%)
  adding: template/ (256 bytes security) (stored 0%)
  adding: template/0000-Header.html (188 bytes security) (deflated 40%)
  adding: template/1000-Overview.html (188 bytes security) (deflated 41%)
  adding: template/1100-Overview-SolexaRealign.html (188 bytes security) (deflated 27%)
  adding: template/2000-RunSummary.html (188 bytes security) (deflated 46%)
  adding: template/3000-ReadDistribution.html (188 bytes security) (deflated 57%)
  adding: template/4000-CycleSpecific.html (188 bytes security) (deflated 46%)
  adding: template/5000-PerTile.html (188 bytes security) (deflated 56%)
  adding: template/6000-Alignment.html (188 bytes security) (deflated 29%)
  adding: template/7000-MultipleAlignment.html (188 bytes security) (deflated 26%)
  adding: template/8000-DepthOfCoverage.html (188 bytes security) (deflated 22%)
  adding: template/9000-AdapterContamination.html (188 bytes security) (deflated 40%)
  adding: template/9999-Footer.html (188 bytes security) (deflated 7%)
  adding: template/image/ (256 bytes security) (stored 0%)
  adding: template/image/bioclogo-small.gif (188 bytes security) (deflated 1%)
  adding: template/QA.css (188 bytes security) (deflated 56%)
  adding: template/QAAdapterContamination.html (188 bytes security) (deflated 39%)
  adding: template/QAFiltered.html (188 bytes security) (deflated 15%)
  adding: template/QAFlagged.html (188 bytes security) (deflated 14%)
  adding: template/QAFooter.html (188 bytes security) (deflated 7%)
  adding: template/QAFrequentSequence.html (188 bytes security) (deflated 30%)
  adding: template/QAHeader.html (188 bytes security) (deflated 40%)
  adding: template/QANucleotideByCycle.html (188 bytes security) (deflated 27%)
  adding: template/QANucleotideUse.html (188 bytes security) (deflated 28%)
  adding: template/QAQualityByCycle.html (188 bytes security) (deflated 40%)
  adding: template/QAQualityUse.html (188 bytes security) (deflated 26%)
  adding: template/QAReadQuality.html (188 bytes security) (deflated 28%)
  adding: template/QASequenceUse.html (188 bytes security) (deflated 52%)
  adding: template/QASources.html (188 bytes security) (deflated 18%)
  adding: template/qa_solexa.Rnw (188 bytes security) (deflated 59%)
  adding: unitTests/ (256 bytes security) (stored 0%)
  adding: unitTests/cases/ (256 bytes security) (stored 0%)
  adding: unitTests/cases/PE_export.txt.gz (188 bytes security) (stored 0%)
  adding: unitTests/cases/sanger.fastq (188 bytes security) (deflated 29%)
  adding: unitTests/cases/soap.txt (188 bytes security) (deflated 76%)
  adding: unitTests/cases/solexa.fastq (188 bytes security) (deflated 28%)
  adding: unitTests/cases/s_1_0001_int_head.txt.p (188 bytes security) (deflated 52%)
  adding: unitTests/cases/s_1_0001_nse_head.txt.p (188 bytes security) (deflated 61%)
  adding: unitTests/cases/s_1_0001_pos_head.txt (188 bytes security) (deflated 34%)
  adding: unitTests/cases/s_1_results_head.txt (188 bytes security) (deflated 74%)
  adding: unitTests/cases/s_1_sequence.8_lines_illegal_nucleotide.txt (188 bytes security) (deflated 50%)
  adding: unitTests/cases/s_1_sequence.8_lines_read_mismatch.txt (188 bytes security) (deflated 50%)
  adding: unitTests/cases/s_1_sequence.8_lines_read_quality_mismatch.txt (188 bytes security) (deflated 50%)
  adding: unitTests/cases/s_1_sequence.9_lines.txt (188 bytes security) (deflated 52%)
  adding: unitTests/cases/s_1_sequence.txt (188 bytes security) (deflated 72%)
  adding: unitTests/cases/s_2_0001_realign_3col_head.txt (188 bytes security) (deflated 58%)
  adding: unitTests/cases/s_2_0001_realign_head.txt (188 bytes security) (deflated 68%)
  adding: unitTests/cases/s_2_export_run_as_factor.txt (188 bytes security) (deflated 57%)
  adding: unitTests/cases/s_2_export_toIUPAC.txt (188 bytes security) (deflated 54%)
  adding: unitTests/test_AlignedRead.R (188 bytes security) (deflated 77%)
  adding: unitTests/test_AllClasses.R (188 bytes security) (deflated 46%)
  adding: unitTests/test_append.R (188 bytes security) (deflated 67%)
  adding: unitTests/test_coverage.R (188 bytes security) (deflated 75%)
  adding: unitTests/test_FastqFile.R (188 bytes security) (deflated 52%)
  adding: unitTests/test_filterFastq.R (188 bytes security) (deflated 59%)
  adding: unitTests/test_functions.R (188 bytes security) (deflated 73%)
  adding: unitTests/test_Intensity.R (188 bytes security) (deflated 69%)
  adding: unitTests/test_qa.R (188 bytes security) (deflated 63%)
  adding: unitTests/test_readAligned.R (188 bytes security) (deflated 72%)
  adding: unitTests/test_readPrb.R (188 bytes security) (deflated 70%)
  adding: unitTests/test_readQseq.R (188 bytes security) (deflated 63%)
  adding: unitTests/test_readXStringColumns.R (188 bytes security) (deflated 69%)
  adding: unitTests/test_renew.R (188 bytes security) (deflated 57%)
  adding: unitTests/test_ShortRead.R (188 bytes security) (deflated 67%)
  adding: unitTests/test_ShortReadQ.R (188 bytes security) (deflated 78%)
  adding: unitTests/test_SolexaIntensity.R (188 bytes security) (deflated 73%)
  adding: unitTests/test_SRError.R (188 bytes security) (deflated 77%)
  adding: unitTests/test_SRFilter.R (188 bytes security) (deflated 80%)
  adding: unitTests/test_SRFilterResult.R (188 bytes security) (deflated 80%)
  adding: unitTests/test_SRList.R (188 bytes security) (deflated 76%)
  adding: unitTests/test_SRVector.R (188 bytes security) (deflated 59%)
  adding: unitTests/test_trimEnds.R (188 bytes security) (deflated 64%)
  adding: unitTests/test_trimTails.R (188 bytes security) (deflated 77%)
  adding: unitTests/test_writeFastq.R (188 bytes security) (deflated 63%)