SeqArray 1.6.1
Xiuwen Zheng
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/SeqArray | | Last Changed Rev: 98378 / Revision: 102249 | | Last Changed Date: 2015-01-15 13:30:03 -0800 (Thu, 15 Jan 2015) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | OK | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/SeqArray_1.6.1.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch SeqArray_1.6.1.tar.gz && rm SeqArray_1.6.1.tar.gz
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100 1023k 100 1023k 0 0 41.7M 0 --:--:-- --:--:-- --:--:-- 62.4M
install for i386
* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'SeqArray' ...
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I. -DUSING_R -I"D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I. -DUSING_R -I"D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
ConvVCF2GDS.cpp: In function 'SEXPREC* sqa_Parse_VCF4(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
ConvVCF2GDS.cpp:767:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ConvVCF2GDS.cpp:793:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ConvVCF2GDS.cpp:860:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I. -DUSING_R -I"D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_SeqArray.c -o R_SeqArray.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I. -DUSING_R -I"D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c ReadByVariant.cpp -o ReadByVariant.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I. -DUSING_R -I"D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c SeqArray.cpp -o SeqArray.o
g++ -m32 -shared -s -static-libgcc -o SeqArray.dll tmp.def ConvGDS2VCF.o ConvVCF2GDS.o R_SeqArray.o ReadByVariant.o SeqArray.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/SeqArray/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'SeqArrayTutorial.Rnw'
** testing if installed package can be loaded
install for x64
* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'SeqArray' ...
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I. -DUSING_R -I"D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I. -DUSING_R -I"D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
ConvVCF2GDS.cpp: In function 'SEXPREC* sqa_Parse_VCF4(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
ConvVCF2GDS.cpp:767:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ConvVCF2GDS.cpp:793:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ConvVCF2GDS.cpp:860:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I. -DUSING_R -I"D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_SeqArray.c -o R_SeqArray.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I. -DUSING_R -I"D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c ReadByVariant.cpp -o ReadByVariant.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I. -DUSING_R -I"D:/biocbld/bbs-3.0-bioc/R/library/gdsfmt/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c SeqArray.cpp -o SeqArray.o
g++ -m64 -shared -s -static-libgcc -o SeqArray.dll tmp.def ConvGDS2VCF.o ConvVCF2GDS.o R_SeqArray.o ReadByVariant.o SeqArray.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/SeqArray/libs/x64
** testing if installed package can be loaded
* DONE (SeqArray)