Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.0: CHECK report for PANR on moscato1

This page was generated on 2015-04-10 09:47:24 -0700 (Fri, 10 Apr 2015).

Package 638/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PANR 1.12.1
Xin Wang
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/PANR
Last Changed Rev: 101038 / Revision: 102249
Last Changed Date: 2015-03-23 08:45:37 -0700 (Mon, 23 Mar 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: PANR
Version: 1.12.1
Command: rm -rf PANR.buildbin-libdir PANR.Rcheck && mkdir PANR.buildbin-libdir PANR.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PANR.buildbin-libdir PANR_1.12.1.tar.gz >PANR.Rcheck\00install.out 2>&1 && cp PANR.Rcheck\00install.out PANR-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=PANR.buildbin-libdir --install="check:PANR-install.out" --force-multiarch --no-vignettes --timings PANR_1.12.1.tar.gz
StartedAt: 2015-04-10 03:59:23 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 04:01:24 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 120.7 seconds
RetCode: 0
Status:  OK  
CheckDir: PANR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf PANR.buildbin-libdir PANR.Rcheck && mkdir PANR.buildbin-libdir PANR.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PANR.buildbin-libdir PANR_1.12.1.tar.gz >PANR.Rcheck\00install.out 2>&1 && cp PANR.Rcheck\00install.out PANR-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=PANR.buildbin-libdir --install="check:PANR-install.out" --force-multiarch --no-vignettes --timings PANR_1.12.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/PANR.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PANR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PANR' version '1.12.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PANR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
viewNestedModules,PAN-numeric_Or_integer_Or_missing-numeric_Or_integer_Or_missing-numeric_Or_integer_Or_missing-logical_Or_missing:
  no visible global function definition for 'RedPort'
viewNestedModules,PAN-numeric_Or_integer_Or_missing-numeric_Or_integer_Or_missing-numeric_Or_integer_Or_missing-logical_Or_missing:
  no visible global function definition for 'calld'
viewNestedModules,PAN-numeric_Or_integer_Or_missing-numeric_Or_integer_Or_missing-numeric_Or_integer_Or_missing-logical_Or_missing:
  no visible global function definition for 'addGraph'
viewNestedModules,PAN-numeric_Or_integer_Or_missing-numeric_Or_integer_Or_missing-numeric_Or_integer_Or_missing-logical_Or_missing:
  no visible global function definition for 'nestNodes'
viewNestedModules,PAN-numeric_Or_integer_Or_missing-numeric_Or_integer_Or_missing-numeric_Or_integer_Or_missing-logical_Or_missing:
  no visible global function definition for 'mergeOutEdges'
viewPAN,PAN-character_Or_missing-numeric_Or_integer_Or_missing-character_Or_missing-logical_Or_missing:
  no visible global function definition for 'RedPort'
viewPAN,PAN-character_Or_missing-numeric_Or_integer_Or_missing-character_Or_missing-logical_Or_missing:
  no visible global function definition for 'calld'
viewPAN,PAN-character_Or_missing-numeric_Or_integer_Or_missing-character_Or_missing-logical_Or_missing:
  no visible global function definition for 'addGraph'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [36s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
fitNULL 32.74   0.03   32.79
** running examples for arch 'x64' ... [34s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
fitNULL 31.72   0.03   31.76
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-3.0-bioc/meat/PANR.Rcheck/00check.log'
for details.

PANR.Rcheck/00install.out:


install for i386

* installing *source* package 'PANR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'PANR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PANR' as PANR_1.12.1.zip
* DONE (PANR)

PANR.Rcheck/examples_i386/PANR-Ex.timings:

nameusersystemelapsed
BetaMixture-class000
PAN-class000
SNR2p000
assoScore0.010.000.01
buildPAN0.980.011.00
cosineSim0.020.000.02
data-Bakal20070.030.000.03
exportPAN000
fitBM000
fitNULL32.74 0.0332.79
infer0.620.000.63
p2SNR000
permNULL0.040.000.03
pvclustModule000
sigModules000
summarize0.010.000.02
view0.360.000.35
viewLegend000
viewNestedModules0.020.000.02
viewPAN000

PANR.Rcheck/examples_x64/PANR-Ex.timings:

nameusersystemelapsed
BetaMixture-class000
PAN-class0.010.000.02
SNR2p000
assoScore0.020.000.01
buildPAN0.720.020.74
cosineSim000
data-Bakal20070.010.010.03
exportPAN000
fitBM000
fitNULL31.72 0.0331.76
infer0.650.000.65
p2SNR0.020.000.02
permNULL0.010.000.02
pvclustModule000
sigModules000
summarize0.030.000.03
view0.310.000.31
viewLegend000
viewNestedModules000
viewPAN000