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BioC 3.0: BUILD report for Mirsynergy on moscato1

This page was generated on 2015-04-10 09:50:04 -0700 (Fri, 10 Apr 2015).

Package 561/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Mirsynergy 1.2.0
Yue Li
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/Mirsynergy
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: Mirsynergy
Version: 1.2.0
Command: chmod a+r Mirsynergy -R && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Mirsynergy
StartedAt: 2015-04-09 21:25:27 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 21:26:50 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 83.1 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r Mirsynergy -R && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Mirsynergy
###
##############################################################################
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* checking for file 'Mirsynergy/DESCRIPTION' ... OK
* preparing 'Mirsynergy':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.0-bioc/R/bin/i386/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: igraph
Loading required package: ggplot2
Discard row/column of all zeros in W
Loading required package: Matrix

Attaching package: 'Matrix'

The following objects are masked from 'package:base':

    crossprod, tcrossprod

Loading required package: foreach
Loaded glmnet 2.0-1

Warning: from glmnet Fortran code (error code -90); Convergence for 90th lambda value not reached after maxit=100000 iterations; solutions for larger lambdas returned

Error: processing vignette 'Mirsynergy.Rnw' failed with diagnostics:
 chunk 4 (label = lasso) 
Error in predmat[which, seq(nlami)] = preds : replacement has length zero
Execution halted