ClassifyR 1.0.18
Dario Strbenac
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/ClassifyR | | Last Changed Rev: 100630 / Revision: 102249 | | Last Changed Date: 2015-03-12 23:01:05 -0700 (Thu, 12 Mar 2015) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf ClassifyR.buildbin-libdir ClassifyR.Rcheck && mkdir ClassifyR.buildbin-libdir ClassifyR.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ClassifyR.buildbin-libdir ClassifyR_1.0.18.tar.gz >ClassifyR.Rcheck\00install.out 2>&1 && cp ClassifyR.Rcheck\00install.out ClassifyR-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=ClassifyR.buildbin-libdir --install="check:ClassifyR-install.out" --force-multiarch --no-vignettes --timings ClassifyR_1.0.18.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/ClassifyR.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ClassifyR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ClassifyR' version '1.0.18'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ClassifyR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [101s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
edgeRselection 29.41 0.25 29.66
ClassifyResult-class 12.03 0.17 16.74
runTests 11.01 0.15 11.17
distribution 10.95 0.20 11.15
mixmodels 10.95 0.03 11.48
runTest 9.11 0.22 9.33
** running examples for arch 'x64' ... [100s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
edgeRselection 26.74 0.27 27.06
ClassifyResult-class 13.54 0.25 13.91
runTests 11.34 0.19 11.53
distribution 10.96 0.20 11.17
runTest 10.51 0.20 10.72
mixmodels 9.74 0.03 10.52
leveneSelection 4.53 0.04 5.48
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
install for i386
* installing *source* package 'ClassifyR' ...
** R
** inst
** preparing package for lazy loading
Creating a new generic function for 'performance' in package 'ClassifyR'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'ClassifyR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ClassifyR' as ClassifyR_1.0.18.zip
* DONE (ClassifyR)