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BioC 3.0: BUILD report for BSgenome on oaxaca

This page was generated on 2015-04-10 10:02:06 -0700 (Fri, 10 Apr 2015).

Package 113/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.34.1
H. Pages
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/BSgenome
Last Changed Rev: 97896 / Revision: 102249
Last Changed Date: 2014-12-27 21:22:34 -0800 (Sat, 27 Dec 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK [ OK ] WARNINGS  OK 

Summary

Package: BSgenome
Version: 1.34.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2015-04-09 17:41:32 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 17:43:09 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 97.2 seconds
RetCode: 0
Status:  OK 
PackageFile: BSgenome_1.34.1.tar.gz
PackageFileSize: 5.789 MiB

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
###
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* checking for file ‘BSgenome/DESCRIPTION’ ... OK
* preparing ‘BSgenome’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory ‘BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/tests/unit’ is empty
* building ‘BSgenome_1.34.1.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘BSgenome/inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh’